Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0236 ATGGGTCTTTGCTTCTCCAGTGCTCCAACACTTCGTTACTCTTCACTCAACAACCCTCACTATCCTTTTCCCGGTGGCCAAATTCTGAAATGGCCTGAGTTAAAGGTGTTCAGTTTTAAGGAGCTAAAATCTGCCACAAGGAATTTTAAATCCAACAGATCGGTCGGTAAGGGTAGGTTTGGCTTAGTTTACAAAGGATGGTTGGATGAGAAGACCCTCACCCCCGTCAAACCAGGATCTGGAGTTGGAGTTGCCATCAAAATGTTCAAGACGAAAGAAACTCGAGGGTTTTTACTGTGGCAGTTTGAGATAAACGTTTTAGGAAGGCTTTCTCACCCCAACGTGGTCAGGCTATTGGGGTACTGTCGGAACGAGAATGAGTTTCTTCTTGTGCATGAGTTCATGCCGAAGGGAAGCCTCAAGTGTCATCTCTTCGAAAAAAATCATGACATGGAACCACTTTCGTGGAACACCCGGCTTAAAATAGTTATCGGTGCAGCTCGGGGATTAGCTTTCTTGCATGCCAACGAAAATAAGGTCATGTTCAGAGATTTCAGCACCTCAAATATACTGTTGGACGGGAATTACAATGCAAAAATAGCATACTTTTGGTTGGGTGAAGGGCGTCCTGCGGAAGAACAATCACATGCAACTAGAAGTTTCACGGATGGTTATTATGCACCAGAATATAACACAACAGGGCAGTTGTACGTGGAGAGTCATGTGCATGGATTTGGTGCGGTGTTTCTTGAAATACTTACAGGCATGAGGACACTTGACATAAGAAGGGCACCAAGACAGCGGAACCTGGTTGATTGGACAAAAACTTGTCTCTCGTCCAAAAAGAAGTGGAAAAACATTATTGATGATAGGATAAAGGATCAAATTTCACCCAAGGCTGCGTTAGAATCAGCACAACTTGCTCTAAAATGCTTAGAGGATAACCGTAAACAACGTCCTTCAATGAAAGAAGTTCTTGAAGGATTGGAAGCCATTCAAGATATCCATTAA 1011 0.4332 MGLCFSSAPTLRYSSLNNPHYPFPGGQILKWPELKVFSFKELKSATRNFKSNRSVGKGRFGLVYKGWLDEKTLTPVKPGSGVGVAIKMFKTKETRGFLLWQFEINVLGRLSHPNVVRLLGYCRNENEFLLVHEFMPKGSLKCHLFEKNHDMEPLSWNTRLKIVIGAARGLAFLHANENKVMFRDFSTSNILLDGNYNAKIAYFWLGEGRPAEEQSHATRSFTDGYYAPEYNTTGQLYVESHVHGFGAVFLEILTGMRTLDIRRAPRQRNLVDWTKTCLSSKKKWKNIIDDRIKDQISPKAALESAQLALKCLEDNRKQRPSMKEVLEGLEAIQDIH* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0236 336 Gene3D Transferase(Phosphotransferase) domain 1 135 336 - -
Vra7g0236 336 ProSiteProfiles Protein kinase domain profile. 49 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g0236 336 SUPERFAMILY Protein kinase-like (PK-like) 30 330 IPR011009 -
Vra7g0236 336 Gene3D Phosphorylase Kinase; domain 1 33 134 - -
Vra7g0236 336 Pfam Protein tyrosine and serine/threonine kinase 51 328 IPR001245 GO:0004672|GO:0006468
Vra7g0236 336 ProSitePatterns Protein kinases ATP-binding region signature. 55 87 IPR017441 GO:0005524
Vra7g0236 336 PANTHER SERINE/THREONINE-PROTEIN KINASE CX32, CHLOROPLASTIC-RELATED 28 335 - -
Vra7g0236 336 PANTHER OS01G0588500 PROTEIN-RELATED 28 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0236 Vra-Chr7 3629947 3631928 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0236 25 335 Receptor kinase-like Gene Family AT4G02010 38.608 2.03e-65 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vra7g0236 PK_Tyr_Ser-Thr 4.5e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0236 - - vra:106765952 692.575