Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0235 TGGCGGCAAGTGGGAGAGTCTTTCAAACCTCCAAAGACATGTACCACAGTTTCATGGACTTTTCGGGTTTTTTATGAGAAGGCACTTCTTGACTATGAAAGGCATAAAACAAAAGGTGGTGAGCTGAATGTGCCTATTACTTCTAATTCAGAGCCAATGAATATTGAAAATCAGTGTGTCCAAGGATTAGCTTCATCAGGTAGGGCACGTAGAGATGCTGCGGCCAGGGCTATGCAGGGTTGGCATTCTCAACGTCTTCTGGGCAATGGTGAAGTTAGTGATCCTATTATTAAGGACAGGAGCTCTTTGTCTATGCAAAAGCGTGAAAAGCAGCTTAGAAGCATCAATGTACTTAAACGCAAGAAATCGTCAGACATGGTGAATGCAGTCAAAGTTGCTCACAGTAATAAACCATCTAAACCACAACTGGACACATCTGTGGTTGACATTGGACCTCCTGCTGATTGGGTAAAAATCAATGTTCAAAAAACTGTGCGTGTTCAATCAGACCCAGCTGGACGCCTGGTCATAAGCGGTGAGCCTGAAAATTCTGACAATCCATGGGGGGTCAAACCTTTCAAGAAGGTTGTGAGTTTGCCTTCAAGAATTGATACTCATCAGACTTCTGCTGTGGTGACTTTGCATGGACAATTGTTTGTTCGAGTTCCATTTGAGCAATCCGAATAA 687 0.4338 WRQVGESFKPPKTCTTVSWTFRVFYEKALLDYERHKTKGGELNVPITSNSEPMNIENQCVQGLASSGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDRSSLSMQKREKQLRSINVLKRKKSSDMVNAVKVAHSNKPSKPQLDTSVVDIGPPADWVKINVQKTVRVQSDPAGRLVISGEPENSDNPWGVKPFKKVVSLPSRIDTHQTSAVVTLHGQLFVRVPFEQSE* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0235 228 ProSiteProfiles ARID domain profile. 1 37 IPR001606 GO:0003677
Vra7g0235 228 Gene3D - 1 45 IPR036431 GO:0003677
Vra7g0235 228 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 1 165 IPR045147 GO:0006357
Vra7g0235 228 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 165 227 IPR045147 GO:0006357
Vra7g0235 228 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 6-LIKE 165 227 - -
Vra7g0235 228 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 6-LIKE 1 165 - -
Vra7g0235 228 CDD ACD_sHsps_p23-like 173 223 - -
Vra7g0235 228 SUPERFAMILY ARID-like 1 48 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0235 Vra-Chr7 3609531 3616076 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0235 1 226 ARID Transcription Factor Family AT1G76510 57.787 3.57e-84 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0235 - - vun:114176226 410.223
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0885 11 7574409 7581524 Vra7g0235 7 3609531 3616076 PCT