Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0229 ATGACACGCGGTCTCAGACTTCTCCAGTCCCAAGCGGCGCCACCTCCTGAGGCCGCCGCCGCCGAGTCCGACTTCGTCGTCATCCTGGCGGCGCTCCTCTGCGCTCTCATTTGCGTGGTGGGCCTCGTCGCCATCGCCCGCTGCGCCTGGCTCCGTCGGGCACCAGCTTTTGTCGGCGCCGGTGGAACTCCGCCGGCGCCCGCCAACAAGGGACTTAAGAAGAGAGTGGTCAATTCGCTGCCGAAGTTCACTTACGCCGGTGAAGGTGATCGCTGCAAGTGGTCGGAGTGCCCGATCTGCCTGACAGAATTTTCCGGCGGCGACGAGGTCCGTGTGCTGCCGCAGTGCGGGCACGGGTTCCACGTGGCGTGCGTGGACACGTGGCTTTCTTCGCACTCGTCCTGCCCCTCGTGCCGCGCGCCTTTCGTAGTCACCCGATGCCAGAAGTGCGGCCACTTCCCGGCGGTCGCAGCCGAATCCAGCGAACCGGAGACGAAACCCGGTGTCGGCTGCAATGCCGATGATAATCGTAATGTAATTGTTAACCACGGGTTTAGTAATTACGGTTTCTTGCCATGA 579 0.6287 MTRGLRLLQSQAAPPPEAAAAESDFVVILAALLCALICVVGLVAIARCAWLRRAPAFVGAGGTPPAPANKGLKKRVVNSLPKFTYAGEGDRCKWSECPICLTEFSGGDEVRVLPQCGHGFHVACVDTWLSSHSSCPSCRAPFVVTRCQKCGHFPAVAAESSEPETKPGVGCNADDNRNVIVNHGFSNYGFLP* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0229 192 SUPERFAMILY RING/U-box 79 145 - -
Vra7g0229 192 ProSiteProfiles Zinc finger RING-type profile. 97 139 IPR001841 -
Vra7g0229 192 CDD RING-H2_PA-TM-RING 96 139 - -
Vra7g0229 192 Pfam Ring finger domain 96 139 IPR001841 -
Vra7g0229 192 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 149 IPR013083 -
Vra7g0229 192 SMART ring_2 97 138 IPR001841 -
Vra7g0229 192 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 1 170 - -
Vra7g0229 192 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0229 Vra-Chr7 3494105 3495004 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0229 1 176 C3H Transcription Factor Family AT1G76410 54.645 3.73e-59 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0229 - - gmx:100813341 285.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0876 11 7408046 7409028 Vra7g0229 7 3494105 3495004 PCT