Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0223 ATGACTAGAGTTGAGATTATGGTGTTGATGGTTCTCTTTGAAGGGTTATTTTCAGCTGGAGCTGTATCAGATAATTCCACAATACCTGCTTTGGTAAACATTGGAGTTCTCTATTCTTTCAATACCAGTGTTGGTAAAATGGTCAAAACTGCTGTAGAAGCGGCGGTTGAAGATGTAAATTCTGACCCATCTATTCTTGCTCAAACTAAGTTGAAGCTCTCAATGCAAGAAGATACCAAATACAGAGGATTTTTGAGCATTGCTGAGGCCTTGCAGCTCATGGCGACACAAACTGTGGCTATAATTGGCCCCCAGACCTCTACAACAGCTCATGTCATATCTCATATAGCAAATGAGCTCCAAGTTCCTCTGCTATCATTTACAGCCACTGACCCTACCCTTTCTTCTCTTCAATTCCCATTCTTTATTAGAACTGCTTTTAGTGACGTCTATGAGATGACTGCAATAGCAGACCTTGTTAACTACTTTCAATGGAGAGAGGTTATTGCAGTTTATGGTGACGATGACCATGGGAGGAATGGAATTGGTGCATTAGGGGATAAGCTTGCCGAGAGGCGTTGCAAGATTTCATTTAAAGCACCTATGACTCCTGAGGCAACTAGAGAGGAGATTACTGATGTACTTGTTCAGGTGGCCCTTGCAGAATCCCGGGTTATAGTTCTTCACACAAGTACTGCTTGGGGTCCAAAAGTCTTAAGTGTGGCAAAGTCTCTGGGGATGATGGAAAATGGTTATGTCTGGATAACAACTACTTTTCTGTCTACTTGGCTGGATATACGTAGTCCCCTATCTCCAGATGCAACCAATGACATGCAAGGGGTCATTGCACTGCGTATGTATGTACCAGATTCAAAGCTCAAAAGATGGTTTATTTCTAGGTGGACAAACATGACTACTTCTGGAAAGAATGGTAATGACACCCTTGGTTTGAGTACTTATGGTATCTTTGCATATGATACTGTTTTTGCTCTTGCTCATGCACTTGATGCATTTTTCAAACGAGGGAATCAAATTACATTTTCACATGATCCAAAGTTATCTCAAATACGTGGAGACAACATGCATCTTGATGCTGTGAAGATCTTTAACGAAGGAAATCTGCTGCGTAAACATATTTATGAGGTTAATATGACTGGAGTATCAGGCCTGTTCAAGTATGATTCTGATGGAAATCTTGTTAATCCAGCTTATGAAATCATCAATGTGATTGGAACAGGAACACGGAGGATTGGTTATTGGTCTAATTACACTGGATTATCCGTTGCTCCTCCAGAAACACTTTATTCAAAGCCACCCAATCGATCCAGTGCAAGCCAAAATCTACTCCCTGTGTTTTGGCCAGGAGAAACAACCCAAAAGCCCCGTGGTTGGGTTTTTCCAAACAATGGAAGGATGTTAAAAATTGGAGTGCCAAAAAGGGTTAGTTACCGGGATTTTGTCTCTCAAGTACAAGGCACTGACATGTTCAAGGGATTCTGCATTGATGTATTTCTTTCTGCAGTGAACTTGTTGCCCTATGCTGTCCCCTATAAATTTGTTTCATATGGGGATGGTGACAGAAATCCTAGTAATACTGAACTTGTCCGTCTTATAACAGCGGATGTTTTTGATGCTGCAGTAGGTGACATTACAATTACAACAGAAAGAACAAAGATGGTGGATTTTACTCAGCCATATATTGAGTCTGGTCTGGTGGTAGTAGCATCAGTTAAGAAGACGGATTCCAATGCTTGGGCATTTTTTAAACCATTTACGCCAATGATGTGGGCTGTCACAGCTATCTTTTTTCTATTAGTGGGAGCTGTTGTTTGGATTTTAGAGCATAGACTGAATGATGATTTTAGGGGAACTCCCAAACAGCAAATGGTCACAATTTTGTGGTTTAGTTTTTCAACCATGTTCTTCGCTCACAGGGAAAATACAGTGAGCACTCTTGGTCGCTTTGTGCTGCTTATATGGTTATTTGTAGTTCTAATTATTAACTCAAGTTATACAGCTAGTCTGACATCAATCCTCACGGTGCAACAACTTTCTTCACCTGTTAAAGGCATTGACAGTTTAATAAATAGCAAAGAGCCTATTGGCTACTTGCAGGGTTCATTTACTCGAACTTATTTGATTGAAGAAATTGGTATTGATGAATCCAGACTGGTTCCTCTGAAAACACCGGAAGAAACTGCAACAGCTCTAAAAAATGGTCCCCAGAAGGGTGGTGTTGCTGCATATGTTGATGAGCGTGCTTACATAGAACTTTTCCTTTCAAGCCGTTGCGAATTTAGCATTGTAGGTCAAGAGTTCACCCGAAATGGTTGGGGATTCGCCTTTCCACGGGACTCACCGTTAGCAGTTGATCTTTCAACTGCCATATTGGAGTTGGCAGAGAACGGAGACTTACAAAGGATCCATGACAAATGGCTTTTGAGCAGTGCCTGCTTATCACAAGGTGCAAAGCTTGAAGTGGACAGACTCAAGCTGAAAAGCTTCTGGGGCCTCTATCTGGTGTGTGGATTGGCATGTGTGCTTGCTCTTCTCATATATGTTGTTCAGACCATGAGACAGTACTCCAAGCACGGCCCAGAGGAACTTGAGTCTTCTGGCCATGGGTCAGGATCTTCACGTCTGCGCACATTCCTTTCCTTTGTAGATGAAAAGGAAGAGATTGTTAAGAACCGTGTGAAGAGAAAGAAAATAGAGGGCATGTCCTACAGGAGCACAAGAGAAGTAGGATCATCCATCAACTCCAACAAAGGATTTTCTCAGGCATCATCATACAGAATTGATTCAGCTACTGAAATCTAA 2820 0.4167 MTRVEIMVLMVLFEGLFSAGAVSDNSTIPALVNIGVLYSFNTSVGKMVKTAVEAAVEDVNSDPSILAQTKLKLSMQEDTKYRGFLSIAEALQLMATQTVAIIGPQTSTTAHVISHIANELQVPLLSFTATDPTLSSLQFPFFIRTAFSDVYEMTAIADLVNYFQWREVIAVYGDDDHGRNGIGALGDKLAERRCKISFKAPMTPEATREEITDVLVQVALAESRVIVLHTSTAWGPKVLSVAKSLGMMENGYVWITTTFLSTWLDIRSPLSPDATNDMQGVIALRMYVPDSKLKRWFISRWTNMTTSGKNGNDTLGLSTYGIFAYDTVFALAHALDAFFKRGNQITFSHDPKLSQIRGDNMHLDAVKIFNEGNLLRKHIYEVNMTGVSGLFKYDSDGNLVNPAYEIINVIGTGTRRIGYWSNYTGLSVAPPETLYSKPPNRSSASQNLLPVFWPGETTQKPRGWVFPNNGRMLKIGVPKRVSYRDFVSQVQGTDMFKGFCIDVFLSAVNLLPYAVPYKFVSYGDGDRNPSNTELVRLITADVFDAAVGDITITTERTKMVDFTQPYIESGLVVVASVKKTDSNAWAFFKPFTPMMWAVTAIFFLLVGAVVWILEHRLNDDFRGTPKQQMVTILWFSFSTMFFAHRENTVSTLGRFVLLIWLFVVLIINSSYTASLTSILTVQQLSSPVKGIDSLINSKEPIGYLQGSFTRTYLIEEIGIDESRLVPLKTPEETATALKNGPQKGGVAAYVDERAYIELFLSSRCEFSIVGQEFTRNGWGFAFPRDSPLAVDLSTAILELAENGDLQRIHDKWLLSSACLSQGAKLEVDRLKLKSFWGLYLVCGLACVLALLIYVVQTMRQYSKHGPEELESSGHGSGSSRLRTFLSFVDEKEEIVKNRVKRKKIEGMSYRSTREVGSSINSNKGFSQASSYRIDSATEI* 940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0223 939 Pfam Ligand-gated ion channel 814 846 IPR001320 GO:0015276|GO:0016020
Vra7g0223 939 Pfam Receptor family ligand binding region 48 411 IPR001828 -
Vra7g0223 939 Gene3D - 50 401 - -
Vra7g0223 939 Gene3D - 584 712 - -
Vra7g0223 939 SUPERFAMILY Periplasmic binding protein-like II 448 815 - -
Vra7g0223 939 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 45 61 - -
Vra7g0223 939 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 106 134 - -
Vra7g0223 939 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 324 336 - -
Vra7g0223 939 CDD GluR_Plant 471 813 - -
Vra7g0223 939 Gene3D - 468 583 - -
Vra7g0223 939 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 10 931 - -
Vra7g0223 939 PANTHER GLUTAMATE RECEPTOR 10 931 - -
Vra7g0223 939 Gene3D - 783 813 - -
Vra7g0223 939 PIRSF IGluLR_plant 1 938 IPR017103 -
Vra7g0223 939 CDD PBP1_GABAb_receptor_plant 33 430 IPR044440 -
Vra7g0223 939 SMART GluR_14 474 815 IPR001320 GO:0015276|GO:0016020
Vra7g0223 939 Gene3D - 733 782 - -
Vra7g0223 939 SUPERFAMILY Periplasmic binding protein-like I 29 465 IPR028082 -
Vra7g0223 939 Gene3D - 148 426 - -
Vra7g0223 939 Pfam Bacterial extracellular solute-binding proteins, family 3 530 813 IPR001638 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0223 Vra-Chr7 3343995 3349143 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0223 7 903 Ion Channels AT3G51480 58.732 0.0 1123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0223 K05387 - gmx:100788917 1668.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0871 11 7349029 7354185 Vra7g0223 7 3343995 3349143 PCT