Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0222 ATGTTCCCAGTAAAATATAACATGAGCAAAGTTTGGGTTCTTGCCCTTCTCATCCTCTATAGTGCCTTTCCCTCAAAAGGAACCGCCATTGTTTCTACAAGATCAAGTGCCGTTAATATTGGGGCAATTTTATCTTTCGACTCTATTGTTGGAAGAGTGGCTAAAGTTGCCATGCAAGCAGCAGTTGATGATGTAAATTCCAATCCAACCATTCTCAACGGAACTAAGCTTAATATCTCAATGTTTGACACCAAATTATCCACTGGATTCCTGGGAATCATCGCTTCACTGAGGTTGATGGCGAGTGACACTGTGGCCATAATTGGTCCCCAGTACTCGGTCATGGCACATGTGATTTCACACATAGCAAATGAGATGCAAGTGCCTCTACTTTCATTTGCTGCGACAGACCCTACACTGACCTCAATGCAGTTCCCATATTTTGTGAGGACCACGCAAAGTGATCTGCATCAGATGGCTGCTGTGGCAGAACTTGTTGATCACTTTCAATGGAGAGATGTCATAGCCATTTTCGTAGATGATGACCATGGAAGAAACGGAGTGGCTGCCTTAGGAGATAAGCTGGCAGAGAAACAAGGTAAAATATCACACAAAGTGCCCTTTAGGCCGTGTAATATAACCCGAGAAGAAATAAACAGTGCATTAGTTAAGGTAGCAGCATTAATGGAATCAAGAGTAATAATCCTTCATATATACCCTTCTTTTGGTTTAGAAGTACTTCATGTGGCTCAATCACTTGGCATGATGCAAAGTGGTTATGTGTGGATAGCCACAGATTGGCTAACCACACTATTAGATTCCGACCCATCCCTGTTCACATCTTCAGCCATGAATGACATCCAAGGTGTTGTCACCTTGCGCATGCATACGCCAGATTCAGACATAAAGGACAAATTTATTTCTAGATGGACCAAACTGATCAAGAAAGAAAATCCTAATCAGGATCCTTTTGGATTAAACATATTTGGTCTTTACGCGTATGATACTGTTTGGGCACTGGCTTATGCACTTGATGCACTTTCAAAGGATGGAGGAACTTTGTCGTTTTCAAATGATTCTAGTGTAATTAACATGTTAACTGGGGACATCCTTCACCTAGATGCTATGAGGGTCTTCGTCAATGGTAGCATGTTGCATAAAAAGATTTTAGAGTTGAACACGAGTGGTTTAACGGGCCAGATGATCTTTGACTCAGATGGAAATTTAATGCATCCATCGTATGAAATCATTAATGTGATAGGCAGTGGAATTAGGAGGATTGGTTATTGGTCTGATACCTCTGGCCTCCACACCGAAGAAGCTCCTATTCATTCCAATTCTAGTGAAAGACTATATGATGTCATCTGGCCAGGTCAAACAACTCAAACACCACGCGGTTGGAGTCTTGCCAGCAATGGAAGACAGTTGAGAATTGGGGTGATAGTTAGAGTTACATTCCCCGAGATTGTGTCAAGAATTGAGGGTACCAATAAGCTTAGTGGTTTTTGCATAGATGTGTTTACTGCTGCAATGAACTTGTTGCCTTACCCGACACCATTCGAGTTTATTCCATTTGGTGATGGTAAAACCAACCCGTCCCATTCAGACTTTCTTCACATGGTCACAATTGGTGCGTTCGATGGTGTGGTGGGGGACATGACCATCAGTACAAGCCGAGCAAAGATAGTGGATTTTACACAGCCATATATTAACTCTGGGCTAGTTGTTGTGGCACCTGTCAAGAAGTTGAAATCCAGTGCTTGGGCTTTTCTCAGACCATTCACTCCAATGATGTGGTCTGTGACAGGAGTGTTCCTCTTGGTGGTGGGAGCTGTCGTGTGGACTTTAGAGCGTGGTACAAACGATCAATTTAGAGGCCCCGCAAGAAGACAAATTGTCACCATTATCTGGTTTAGCTTCTCAACCCTATTTTCTACGCAGAAAGAGAAGACTGTGAGCACTCTTGGTCGTTTCGTATTAATCATATGGCTGTTTGTGGTTTTGATACTTAACTCAAGTTATACTGCAAGCCTCACCTCCATCCTAACTGTGGAACACCTTTCATCCCAAGTCAAGGGAATTGAAAGCTTAATAGCAAATAATGAACCCGTTGGTTACGTGAAGGATACATTTATTGAAAATTATATAACTGCGGAACTACACATGGACAGATCCAGGCTTGTTCCTCTGAACTCCATGTTAGAATATGAAAAGGCCTTAAAAGATGGACCAGGTGGTGGTGGTGTTGCTGCAATAATAGATGAACGTGCATGCATGGAGCTCTTCCTAGCAACCAGATGTGAATATAGTATTGTTGGTAAAGAGTTCACCAAGAGTGGATGGGGTTTTGGCTTCCCAAGGGAATCTCCCCTAGCAGTTGACATGTCAACTGCCATCCTAAAACTATCAGAGAGTGGTGATCTTCAGAGAATTCATGATAAATGGCTAACAGGAATGGCTTGCAGCTCAGAAGGAGCAAAAGAAAGCATTGATCGACTTGAGCTGAAAAGCTTTTGGGGGCTTTACTTGCTGAGTGGCATAGCCTGCTTCATTGGTCTCCTTTGCTATGTCATTAGATTGATCTACCGTTTTAACAGGCACTCTAACAGTAACCTTGAAGGCTCATCATTCTCTTCTCATCTTCGATCCTTCCTTTCCTTTGCTAATGAAAAAGAAGCAGGACAAAAGGACAACTGCCCTTGTACAAAGGTAGTAGTGCATGAAGATGGATCTTAA 2736 0.4251 MFPVKYNMSKVWVLALLILYSAFPSKGTAIVSTRSSAVNIGAILSFDSIVGRVAKVAMQAAVDDVNSNPTILNGTKLNISMFDTKLSTGFLGIIASLRLMASDTVAIIGPQYSVMAHVISHIANEMQVPLLSFAATDPTLTSMQFPYFVRTTQSDLHQMAAVAELVDHFQWRDVIAIFVDDDHGRNGVAALGDKLAEKQGKISHKVPFRPCNITREEINSALVKVAALMESRVIILHIYPSFGLEVLHVAQSLGMMQSGYVWIATDWLTTLLDSDPSLFTSSAMNDIQGVVTLRMHTPDSDIKDKFISRWTKLIKKENPNQDPFGLNIFGLYAYDTVWALAYALDALSKDGGTLSFSNDSSVINMLTGDILHLDAMRVFVNGSMLHKKILELNTSGLTGQMIFDSDGNLMHPSYEIINVIGSGIRRIGYWSDTSGLHTEEAPIHSNSSERLYDVIWPGQTTQTPRGWSLASNGRQLRIGVIVRVTFPEIVSRIEGTNKLSGFCIDVFTAAMNLLPYPTPFEFIPFGDGKTNPSHSDFLHMVTIGAFDGVVGDMTISTSRAKIVDFTQPYINSGLVVVAPVKKLKSSAWAFLRPFTPMMWSVTGVFLLVVGAVVWTLERGTNDQFRGPARRQIVTIIWFSFSTLFSTQKEKTVSTLGRFVLIIWLFVVLILNSSYTASLTSILTVEHLSSQVKGIESLIANNEPVGYVKDTFIENYITAELHMDRSRLVPLNSMLEYEKALKDGPGGGGVAAIIDERACMELFLATRCEYSIVGKEFTKSGWGFGFPRESPLAVDMSTAILKLSESGDLQRIHDKWLTGMACSSEGAKESIDRLELKSFWGLYLLSGIACFIGLLCYVIRLIYRFNRHSNSNLEGSSFSSHLRSFLSFANEKEAGQKDNCPCTKVVVHEDGS* 912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0222 911 CDD GluR_Plant 474 816 - -
Vra7g0222 911 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 51 67 - -
Vra7g0222 911 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 112 140 - -
Vra7g0222 911 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 333 345 - -
Vra7g0222 911 SMART GluR_14 475 818 IPR001320 GO:0015276|GO:0016020
Vra7g0222 911 CDD PBP1_GABAb_receptor_plant 39 436 IPR044440 -
Vra7g0222 911 SUPERFAMILY Periplasmic binding protein-like II 454 817 - -
Vra7g0222 911 Gene3D - 154 436 - -
Vra7g0222 911 Pfam Bacterial extracellular solute-binding proteins, family 3 492 817 IPR001638 -
Vra7g0222 911 Gene3D - 764 823 - -
Vra7g0222 911 Pfam Ligand-gated ion channel 818 849 IPR001320 GO:0015276|GO:0016020
Vra7g0222 911 Gene3D - 587 721 - -
Vra7g0222 911 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 18 899 - -
Vra7g0222 911 Gene3D - 56 411 - -
Vra7g0222 911 SUPERFAMILY Periplasmic binding protein-like I 35 467 IPR028082 -
Vra7g0222 911 PIRSF IGluLR_plant 6 909 IPR017103 -
Vra7g0222 911 Pfam Receptor family ligand binding region 56 421 IPR001828 -
Vra7g0222 911 Gene3D - 472 586 - -
Vra7g0222 911 PANTHER GLUTAMATE RECEPTOR 18 899 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0222 Vra-Chr7 3331813 3335761 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0222 12 896 Ion Channels AT3G51480 54.362 0.0 994
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0222 K05387 - gmx:100789442 1381.7