Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0221 ATGGAGCGTGAAACTGCTGCCATAATAGGTCCCCAGTACTCAGTAATGGCACATGTGATTTCACACGTAGCAAATGAGATGCAAGTGCCTCTCCTTTCATTTTCAGCAACAGACCCTACGCTGACTTCACTGCAGTTCCCATATTTTGTTCGGACAACGCAGAGTGATCTGTATCAGATGACTGCTGTGGCAGACATTGTTGATCACTTTCAATGGAGAGATGTCATAGCCATTTACATCGATGATGATCATGGAAGAAATGGGGTGTCCGTTTTAGGGGATAAGCTAGCAGAGAAACGTGGTAAAATATCACACAAAGCAACACTTAATCCTGGTAACATTACTCGGGAAGAAATAAACAGTGCATTAGTTAAGATAGCTTTAATGCAATCAAGGGTAATAGTCCTTCATATATACCCTTCTTTTGGTCTAGATGTATTGAATGTGGCTCGTTCACTTAACATGATGGGAAGTGGCTATGTGTGGATAGCCACAGATTGGCTTTCTACATTATTAGATTCAAACCCATCATTGTTCACCACTCAATCCATAAATGACATCCAAGGTCTTATCACCTTGCGCATGTATACCCCTGAGTCAGAAATCAAAAGAAAATTTAGTTCTAGTTGGAACAAACTGAGCAAGGAAAAGGATCCTGTTGAGGGTCCTTTCCCATTGAACACCTTTGGCTTTTACGCCTACGACACTGTTTGGGTGCTTGCTTCTGCACTGGATGCGTTTTTCAGGAGTGGGGGAACATTGTCATTTTCAAATGATTCAAGTCTAAACATGTTAAGGGGGGGAAGTTTTGAGCTTGATAGCATGAGAGTGTTTCTTGATGGTGAGAAACTGCTTAAAAGAATTTTAGAGGTGAACAGAAGTGGTCTAACAGGGGAAATGATGTTTGGACAAGATGGAAACTTGGTGCATTCATCGTATGAAGTAATTAATGTGATAGGCAGTGGAATTAGGAGGATTGGTTATTGGTCTGAAACATCTGGCCTCCACACTGGTGAGTCTCCTAATCATTCCATTTCTGGTGATGGACTCTATGGTGTCATCTGGCCTGGTCAAACCATTCAAACCCCACGTGGATGGGTTTTTTCCAACAATGGTAAACCCTTGAGAATTGGGGTGCCACTTAGAATTAGTTATCGTGAGTTTGTGTCAAGAACTGAGGGAACTGAGATGTTTGGTGGTTATTGCATAGATGTGTTCACTGCTGCTCTCAGCTTGTTGCCATATCCCGTTCCCTACAAGTTTTTTTCATTTGGAGACGGTAAAACCAACCCATTAAATTCAGATCTTCTTCACATGATAACAGTCGGTGCCTTCGATGCTGTGGTGGGAGACATAACCATTACTACTAACCGAACCAAGATAGTGGACTTTACTCAGCCATATATTGAGTCTGGGCTCGTTGTTGTGGCTCCTATCAAGAAGTTGAAATCCAGTGCTTGGGCTTTCCTAACACCATTCAGTCCAATGATGTGGTTTGTGACAGGAATGTTTTTCTTAGTGGTGGGAGCTGTTGTGTGGATTTTAGAGCGTCGCATAAATGATGACTTTAGAGGCCCTGCCAGAAGACAATTTGTCACCATTATTTGGTTTAGCTTCTCAACCCTATTTTTTGCACATAGAGAAAAAACTGTTAGCACCCTTGGTCGCTTTGTGCTGATCATATGGCTGTTTGTGGTTTTGATACTAAACTCAAGCTACATTGCAAGTCTGACCTCTATCCTAACAGTGGAACAACTCTCTTCACCGATTAAAGGAATCGAAAGCTTAGTAATAAGCAACGATCGTATTGGTTTCCTGAGGGGTTCATTTGCTGAGAATTATCTGATAGAGGAGCTGAACATACACAGGTCCAGGCTTGTTCCTCTGAACTCCCCATCAGAATATGAAAAATCCTTGAAGGATGGAGCAGCTAACGGTGGTGTTGCTGCAATAATAGATGAACGTGCATATATGGAACTCTTCCTAGCCACCAGATGTGAATTTGGTATCGTGGGTCAGGAGTTCACCAAGATGGGATGGGGCTTTGTAAGTATATAA 2058 0.4223 MERETAAIIGPQYSVMAHVISHVANEMQVPLLSFSATDPTLTSLQFPYFVRTTQSDLYQMTAVADIVDHFQWRDVIAIYIDDDHGRNGVSVLGDKLAEKRGKISHKATLNPGNITREEINSALVKIALMQSRVIVLHIYPSFGLDVLNVARSLNMMGSGYVWIATDWLSTLLDSNPSLFTTQSINDIQGLITLRMYTPESEIKRKFSSSWNKLSKEKDPVEGPFPLNTFGFYAYDTVWVLASALDAFFRSGGTLSFSNDSSLNMLRGGSFELDSMRVFLDGEKLLKRILEVNRSGLTGEMMFGQDGNLVHSSYEVINVIGSGIRRIGYWSETSGLHTGESPNHSISGDGLYGVIWPGQTIQTPRGWVFSNNGKPLRIGVPLRISYREFVSRTEGTEMFGGYCIDVFTAALSLLPYPVPYKFFSFGDGKTNPLNSDLLHMITVGAFDAVVGDITITTNRTKIVDFTQPYIESGLVVVAPIKKLKSSAWAFLTPFSPMMWFVTGMFFLVVGAVVWILERRINDDFRGPARRQFVTIIWFSFSTLFFAHREKTVSTLGRFVLIIWLFVVLILNSSYIASLTSILTVEQLSSPIKGIESLVISNDRIGFLRGSFAENYLIEELNIHRSRLVPLNSPSEYEKSLKDGAANGGVAAIIDERAYMELFLATRCEFGIVGQEFTKMGWGFVSI* 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0221 685 Gene3D - 375 485 - -
Vra7g0221 685 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1 683 - -
Vra7g0221 685 Pfam Ligand-gated ion channel 496 600 IPR001320 GO:0015276|GO:0016020
Vra7g0221 685 Gene3D - 486 616 - -
Vra7g0221 685 PANTHER GLUTAMATE RECEPTOR 1 683 - -
Vra7g0221 685 Pfam Bacterial extracellular solute-binding proteins, family 3 435 659 IPR001638 -
Vra7g0221 685 SUPERFAMILY Periplasmic binding protein-like I 3 366 IPR028082 -
Vra7g0221 685 PRINTS Metabotropic glutamate GPCR signature 8 34 IPR000337 GO:0004930|GO:0007186|GO:0016021
Vra7g0221 685 PRINTS Metabotropic glutamate GPCR signature 40 59 IPR000337 GO:0004930|GO:0007186|GO:0016021
Vra7g0221 685 PRINTS Metabotropic glutamate GPCR signature 59 75 IPR000337 GO:0004930|GO:0007186|GO:0016021
Vra7g0221 685 PRINTS Metabotropic glutamate GPCR signature 75 92 IPR000337 GO:0004930|GO:0007186|GO:0016021
Vra7g0221 685 Gene3D - 1 310 - -
Vra7g0221 685 SMART GluR_14 376 684 IPR001320 GO:0015276|GO:0016020
Vra7g0221 685 Gene3D - 55 335 - -
Vra7g0221 685 Pfam Receptor family ligand binding region 5 320 IPR001828 -
Vra7g0221 685 SUPERFAMILY Periplasmic binding protein-like II 352 683 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0221 Vra-Chr7 3301696 3304229 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0221 1 683 Ion Channels AT1G42540 60.375 0.0 845
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0221 K05387 - gmx:100790502 1199.11