Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0220 ATGACAAAGATTTGGCTTCTTTTCCTCCTCATCTTCTACCATGCCTTTCCTTCAAAGGGAATCAGCAGTATTTCTACAAGACCAAGAACTGTTAACGTAGGCGCTCTCATGTCCTTCAATTCAACAGTTGGAAGAGTGGCTAAGGTTGCTATACAAGCTGCAGTGGATGATGTCAACTCAGATGCCACTATTCTTAATGGAACTGAGTTAAAGATTTTAATGTTGGACACCAAATTATCCACTGGGTTCCTGGGAATCGTTGACTCATTAAGACTGATGGAGAATGACACTGTGGCCATAATTGGCCCCCAGTACTCAGTAATGGCTCATGTGATTTCACACATAGCAAATGAGATGCAAGTGCCTCTCCTATCATTTGCAGCCACGGACCCTACACTCACTTCACTGCAGTTCCCATATTTTGTTAGGACAACACAGAGTGATCTGTATCAGATGACTGCTGTGGCAGAAATTGTTGATCACTTTCAATGGAGAGATGTCATAGCCATTTACATCGATGATGATCATGGAAGAAATGGGGTGTCCGTTTTAGGGGATAAGCTAGCAGAGAAACGTGGTAAAATATCACACAAAGCAACACTTAATCCTGGTAACATTACTCGGGAAGAAATAAACAGTGCATTAGTTAAGATAGCTTTAATGCAATCAAGGGTAATAGTCCTTCATATATACCCTTCTTTTGGTCTAGATGTATTGAATGTGGCTCGTTCACTTAACATGATGGGAAGTGGCTATGTGTGGATAGCCACAGATTGGCTTTCTACATTATTAGATTCAAACCCATCATTGTTCACCACTCAATCCATAAATGACATCCAAGGTCTTATCACCTTGCGCATGTATACCCCTGAGTCAGAAATCAAAAGAAAATTTAGTTCTAGTTGGAACAAACTGAGCAAGGAAAAGGATCCTGTTGAGGGTCCTTTCCCATTGAACACCTTTGGCTTTTACGCCTACGACACTGTTTGGGTGCTTGCTTCTGCACTGGATGCGTTTTTCAGGAGTGGGGGAACATTGTCATTTTCAAATGATTCAAGTCTAAACATGTTAAGGGGGGGAAGTTTTGAGCTTGATAGCATGAGAGTGTTTCTTGATGGTGAGAAACTGCTTAAAAGAATTTTAGAGGTGAACAGAAGTGGTCTAACAGGGGAAATGATGTTTGGACAAGATGGAAACTTGGTGCATTCATCGTATGAAGTAATTAATGTGATAGGCAGTGGAATTAGGAGGATTGGTTATTGGTCTGAAACATCTGGCCTCCACACTGGTGAGTCTCCTAATCATTCCATTTCTGGTGATGGACTCTATGGTGTCATCTGGCCTGGTCAAACCATTCAAACCCCACGTGGATGGGTTTTTTCCAACAATGGTAAACCCTTGAGAATTGGGGTGCCACTTAGAATTAGTTATCGTGAGTTTGTGTCAAGAACTGAGGGAACTGAGATGTTTGGTGGTTATTGCATAGATGTGTTCACTGCTGCTCTCAGCTTGTTGCCATATCCCGTTCCCTACAAGTTTTTTTCATTTGGAGATGGTAAAACCAACCCACCAAACGCAAAACTTCTCAACAAGATCAATATTGGGGAGTTGGATGCAGTTGTGGGGGACATTACCATTACCACAAACCGAACTAAGATAGTGGATTTTACACAGCCATATATTGAGTCGGGGCTAGTTGTTGTGGCACCTATAAGGAAGATGAAATCCAGTGCTTGGGCTTTCCTGAGACCATTCACTCCAATGATGTGGTTTGTGACAGGAATGTTTTTCTTAGTTGTGGGAGCTGTTGTATGGATTCTGGAGCGTCGCTTAAATGATGAGTTCAGAGGCCCAGCTAGAAGGCAGTTTGTGACCATTATATGGTTTAGCTTTTCAACCCTGTTTTTTTCTCATCGAGAGAAAACTGTGAGCACCCTTGGTCGTTTAGTGCTGATCATATGGCTATTTGTGGTTTTGATACTGAACTCAAGCTACATTGCAAGCCTGACCTCGATCCTAACTGTGGAACAGCTCTCATCCTCGGTTAAGGGAATTGAAAGCTTAGCAACAAGCGATGAACGGATTGGTTTCCTGAGTGGGTCCTTTGCTGAAAATTATCTGACAGAGGAGCTGAACATACACAGATCAAGGCTTGTTCCTCTGAACTCCCCATCAGAATATGAAAAGGCCTTGAAAGATGGTGCTGCCAATGGAGGTGTCACTGCCATAATAGATGAACGTGCATACATGGAACTCTTCCTGGCTACCAGATGTGAATACGGTATTGTTGGGCAAGAGTTCACCAAGATGGGATGGGGCTTTGCCTTCCCAAGAGACTCTCCCTTGGCAATTGACATGTCGACTGCCATCTTAAAACTTTCGGAGAATGGTGATCTTGAGAGAATTCATGACAAATGGCTAACAAGAAGTGCATGTAGCTCAGAGGGTGCAAAACAAGGCATTGACAGACTTGAGCTAAAAAGCTTTTGGGGTCTGTTCCTACTTAGTGGCATAGCATGCTTCGTTGCTCTTCTTTGCTATGTTGCAAGGATGGTCTACCGATTTAGCAGACACTCCAACACTAATTCCCAAGGCTCTTCACACTCCGCTCGTCTTCGATCATTCTTTACCTTTGTGAATGAAAGAGAAGAGGAAGACAAACATATGTCTAAGAGAAAACGAACGGAAAAGGGATCAAGTGGAAGGGTGGCGCATCATGAACAATTGGATGCCTCCACTCTTCAAAATTATACCCCAGGCTAA 2763 0.4289 MTKIWLLFLLIFYHAFPSKGISSISTRPRTVNVGALMSFNSTVGRVAKVAIQAAVDDVNSDATILNGTELKILMLDTKLSTGFLGIVDSLRLMENDTVAIIGPQYSVMAHVISHIANEMQVPLLSFAATDPTLTSLQFPYFVRTTQSDLYQMTAVAEIVDHFQWRDVIAIYIDDDHGRNGVSVLGDKLAEKRGKISHKATLNPGNITREEINSALVKIALMQSRVIVLHIYPSFGLDVLNVARSLNMMGSGYVWIATDWLSTLLDSNPSLFTTQSINDIQGLITLRMYTPESEIKRKFSSSWNKLSKEKDPVEGPFPLNTFGFYAYDTVWVLASALDAFFRSGGTLSFSNDSSLNMLRGGSFELDSMRVFLDGEKLLKRILEVNRSGLTGEMMFGQDGNLVHSSYEVINVIGSGIRRIGYWSETSGLHTGESPNHSISGDGLYGVIWPGQTIQTPRGWVFSNNGKPLRIGVPLRISYREFVSRTEGTEMFGGYCIDVFTAALSLLPYPVPYKFFSFGDGKTNPPNAKLLNKINIGELDAVVGDITITTNRTKIVDFTQPYIESGLVVVAPIRKMKSSAWAFLRPFTPMMWFVTGMFFLVVGAVVWILERRLNDEFRGPARRQFVTIIWFSFSTLFFSHREKTVSTLGRLVLIIWLFVVLILNSSYIASLTSILTVEQLSSSVKGIESLATSDERIGFLSGSFAENYLTEELNIHRSRLVPLNSPSEYEKALKDGAANGGVTAIIDERAYMELFLATRCEYGIVGQEFTKMGWGFAFPRDSPLAIDMSTAILKLSENGDLERIHDKWLTRSACSSEGAKQGIDRLELKSFWGLFLLSGIACFVALLCYVARMVYRFSRHSNTNSQGSSHSARLRSFFTFVNEREEEDKHMSKRKRTEKGSSGRVAHHEQLDASTLQNYTPG* 921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0220 920 PANTHER GLUTAMATE RECEPTOR 18 893 - -
Vra7g0220 920 CDD PBP1_GABAb_receptor_plant 32 427 IPR044440 -
Vra7g0220 920 Gene3D - 721 814 - -
Vra7g0220 920 SUPERFAMILY Periplasmic binding protein-like I 27 458 IPR028082 -
Vra7g0220 920 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 18 893 - -
Vra7g0220 920 Pfam Receptor family ligand binding region 49 412 IPR001828 -
Vra7g0220 920 Gene3D - 467 577 - -
Vra7g0220 920 SMART GluR_14 468 809 IPR001320 GO:0015276|GO:0016020
Vra7g0220 920 MobiDBLite consensus disorder prediction 883 904 - -
Vra7g0220 920 Gene3D - 578 712 - -
Vra7g0220 920 Gene3D - 147 427 - -
Vra7g0220 920 SUPERFAMILY Periplasmic binding protein-like II 444 809 - -
Vra7g0220 920 Pfam Bacterial extracellular solute-binding proteins, family 3 524 808 IPR001638 -
Vra7g0220 920 CDD GluR_Plant 465 807 - -
Vra7g0220 920 PIRSF IGluLR_plant 1 918 IPR017103 -
Vra7g0220 920 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 44 60 - -
Vra7g0220 920 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 105 133 - -
Vra7g0220 920 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 325 337 - -
Vra7g0220 920 Gene3D - 49 402 - -
Vra7g0220 920 MobiDBLite consensus disorder prediction 883 920 - -
Vra7g0220 920 Pfam Ligand-gated ion channel 809 840 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0220 Vra-Chr7 3282985 3286521 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0220 5 894 Ion Channels AT3G51480 56.618 0.0 1053
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0220 K05387 - gmx:100790502 1599.33