Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0219 ATGTCGTGTTCTTCTTCATCTGGGTCTGAAGAGGACGATGAGGGATTCGACTCCTACCGGAAAGGGGGGTACCACGCCGTCAGAATCGGCGATCAGTTCGCCGGCGGCAGGTACATAGCGCAGAGGAAGCTGGGTTGGGGTCAGTTTTCCACAGTTTGGCTTGCCTATGATACTTCAACATCTGCATATGTTGCACTTAAGATTCAGAAAAGTGCGGCCCAATTTGTTCAGGCTGCCCTTCATGAAATTGATGTTCTTGCATCCATTTCTGATGGCGTTGATGTTAATTCAAAATGTGTTGTCCAGTTGATTGATCACTTTAAGCACGCAGGTCCTAATGGTCAGCACCTTTGCATGGTGATTGAGTTTCTTGGGGATAGCTTGCTTCGTCTAATAAAGTATAACCGGTACAAAGGTCTTCCATTGAATAAAGTTAGGGAGATCTGCCATTGCATTTTGATTGGTTTGGATTATTTGCATAGGGAACATGGTATTATCCACACTGACCTAAAACCAGAAAATGTTCTTCTGATTTCTACCATTGATCCTGCAAAAGACCCTGTTAAATCTGAAGTCAGTCCAATATTGGAGAGGCCTGAGGGAAGCATAAATGGTGGAGTTACTAGTCTTATTGAGAAAAAATTGAAAAGAAGAGCTAGGAGGGCCGTTGCTAAAATCTCTGGAAGAACAGCCTCAATAGGAGGAACAGAAGATCAAAAGTCTGTGAGAAATCTAGATGGGATTGATGTGAGATGCAAGGTGGTAGATTTTGGAAATGCTTGTTGGGCCGACAAGCAGTTTGCAGAAGAAATTCAGACAAGACAGTACAGAGCTCCTGAAGTAATACTGCAGGCTGGCTATTCCTTCTCTGTTGACATGTGGTCTTTCGCGTGCATTGCTTTTGAGCTTGCCACTGGTGATATGTTATTTACGCCCAAAGTTGGACAAGGTTTTAGTGAGGATGAGGATCACCTTGCCCTGATGATGGAACTCCTTGGAAAGATGCCTCGGAAGGTTGCTACTGCTGGAGCAAAATCGAAGGATTTCTTTGACAGACATGGCGATCTGAAAAGAATTCGAAGACTAAAGTTTTGGCCACTTAGCAAATTGTTGGTTGATAGATACAAATTTTCGCAGAGTGATGCTCATGAATTTTCAGAGTTTCTTCTACCACTTCTGGATTTCGTCCCTGAGAAGCGGCCAACAGCACAGCAGTGTCTGCAACATCCATGGCTCCGGGGCACGGAGTCAAACGAAAAAAATGAATCCAGTGTGGAGAATGTGGGTGTTGGAATGAGCAACCTTAAAATCAAGTGA 1317 0.4412 MSCSSSSGSEEDDEGFDSYRKGGYHAVRIGDQFAGGRYIAQRKLGWGQFSTVWLAYDTSTSAYVALKIQKSAAQFVQAALHEIDVLASISDGVDVNSKCVVQLIDHFKHAGPNGQHLCMVIEFLGDSLLRLIKYNRYKGLPLNKVREICHCILIGLDYLHREHGIIHTDLKPENVLLISTIDPAKDPVKSEVSPILERPEGSINGGVTSLIEKKLKRRARRAVAKISGRTASIGGTEDQKSVRNLDGIDVRCKVVDFGNACWADKQFAEEIQTRQYRAPEVILQAGYSFSVDMWSFACIAFELATGDMLFTPKVGQGFSEDEDHLALMMELLGKMPRKVATAGAKSKDFFDRHGDLKRIRRLKFWPLSKLLVDRYKFSQSDAHEFSEFLLPLLDFVPEKRPTAQQCLQHPWLRGTESNEKNESSVENVGVGMSNLKIK* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0219 438 ProSitePatterns Protein kinases ATP-binding region signature. 44 67 IPR017441 GO:0005524
Vra7g0219 438 ProSiteProfiles Protein kinase domain profile. 38 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g0219 438 MobiDBLite consensus disorder prediction 415 438 - -
Vra7g0219 438 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 7 419 - -
Vra7g0219 438 PANTHER OS07G0472400 PROTEIN 7 419 - -
Vra7g0219 438 Gene3D Phosphorylase Kinase; domain 1 24 123 - -
Vra7g0219 438 Pfam Protein kinase domain 251 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g0219 438 Pfam Protein kinase domain 39 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g0219 438 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
Vra7g0219 438 SMART serkin_6 38 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g0219 438 CDD STKc_SRPK 27 412 - -
Vra7g0219 438 Gene3D Transferase(Phosphotransferase) domain 1 92 412 - -
Vra7g0219 438 SUPERFAMILY Protein kinase-like (PK-like) 32 416 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0219 Vra-Chr7 3277839 3281989 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0219 4 427 EF-hand Containing Proteins AT5G22840 51.464 2.46e-172 492
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Vra7g0219 Pkinase 6.1e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0219 K08832 - gmx:100811724 776.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0867 11 7322736 7326941 Vra7g0219 7 3277839 3281989 PCT