Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0216 ATGGGAGGCTTATTACACATGTTTGAGTTCAATCAGGGTAGGATGGCCAAGAAAATTCATGCTCATAAGAACAATAACGACGATATGGAAACATCTGGCAATGGCATGAAGCTGCAAGTAGAAACCTCTCAGGTCCACTGTGCAGAAGGAGAATTACAATACTCCTGTCAAGTAGAAGATGGCTGGTCAAAGAAAATTAGTCACTCAAATGTGGATTCAGTGAAAAAAGCGAACAAAGAGGGTTTTTCCAAACAATCAGGCGCCAGAAGTAATGCCCCTAGCCTTGTGGCAAGGTTGATGGGGATAGACACCATGCCTTTACCATTAGACACTAAATCTGTTGTTCCATTGGATGAAAGCACACATGAAAATATGGAGAGGAAGTTTTCAAAGAAGAAAATGAACGGAAAAGGTTGGTTTGGTAGGGGTTCTTCAAACTTGAATTCTTTTAGCCATATGGAATTTGATTCATTTTATCAGCACATCGATGATGATGATGAAGATGATGAAGGTGGACATAGTTTTGGAGAACCGGAGCCAAGGGAACATCCTCAAGAAGAGGAACTCCAAAAATTCAAGAAAGACTTTGAAGAGTATCAATCAACAAGGTTTAAGGAGTGGCCGAAGGCTGTTGACATCGGAAGTGGTTCTAGGAGAATGCTTTCTCTTTCTCAAGAGAACCTGAGCAAGGAGAACATGCAACATATTTCGAGTTCAAAGACAGATAGCCACTCATTTAAGAAAAAAGAATCCTTTCCATCAAGAAGTAAAACACAAAGTAGGGACTTTGAGGAGTCTTTAATGATGAAATCCAAAAGCAGATTATTAGATATATGCACTTCTCCCACTCAGATAGTTATCTTGAAGCCTGGTTCTGAAAGGATTTGTAATTGCAACCATGAAGAGAATTTCAAAAGTTTGCATAGGAGAAAAGGTATAGAAGATTTTCTTGAGGAAGTGAGAGAGCGCTTGAAGTGTGAACTCCAAGGGATTAGAGCTAGTGGAATTGAGACACCTTTCAATGATAAATCTGATGCTAAAGAGGTCAGAGAAAGTATGACTAGAGATGCTGAACCTAATTTACTGCGCTCAGAATCAACAAGATCATACAAAAGTAAAATGCAGCTCAACGGACAAAGTTCCCCAGAATTTTTCAACATAGATACTAGGAGGTTCTTGTCAGAGAGGTTAAGAAATACTGTAAAAAATGAATTGCATTTGGACATTCCTGAAGTGGCTTGTTATTTAGAGAATGACAGAGTTAGACTAAAGCAAGATACTATAAAGGGTCCAGATGACAAGAGCCAGTGGGGAGTTCTAAAAGAGAAAAAAGAATTACAAACATGTTCCAATAGACATAAATTAGATGACAACGTATTTCTCCACAAGGAGTTGTCACCTAGGAATCTTGAAAGATCCTTGTCTGCTCCTGCATCAGGAGCATCATTTGGAAGGCTTCTTTTGGAGGACCGCCACATTTTAACGGGTGCCCTTATTCAGAGGAAGCTTGAAGCTGTTGAAGCAAGGCCAGTGGGTGCTAAAAAACAGAAGAAAGATGGACTTAATATTAAAGAAAAACTTTCCAATTTTAAATATACTCTTGGTCTAAGACGGAAGCTGTTTGGCAAAAGGATTATGTCAAAAGTAGAATCACATGGCAGCGAATATGGTGAAATTTTGAGAGATGCCAGGAGTGGACCAACTATTCTCATGAAATATGGTGGCAGACATGAGAACTCCACCGAGGTACCTCCTAGTCCTGCATCTGTGAGCAGCTGTGCTGATGAAGAACATTGGAGACAGATTGGGTATTCAAGTCTAACATCAACTCCAGATGCATCTTCATTAGATGATATTTTTGTTCCCAAGATTTTTAGAGATATCAGCTCTGGTTTGAACGACCTAAAGAGGCAACTCAGTGAGCTTGATTCCGACGGCTATGTTGATTTCACTAGAAAGCAGGACCCGATTGAGTCTTCATTAGTTGAATTGGATGGTCCAGAAGAATCTTATGTAAGAGATCTGCTTGTTGCCTCTGGTTTGTACTTTGGCTCATGGGAAAAATACATCGGCAACTCAGTATTTGAAGAAGTGGAAGAATCTCATAGGAAATTGGTGAAGGAGGATGAAAGATCCAAAAAAGATGATAACAAGAATAAGTTAGAGCACAAGGTTTTGCTTGATTTGTTAAATGAGGCACTTTCTATTGTTCTTGGACCACCTTTGACATTGTCTAGATTCAGAAGGAAACTAAGCAATTCCTCCATGCAGCCTCCACCATGTGGAAAGGAACTACTAAAGTTAGTATGGGACATTGTCCGTGTTTCTTTACATCCAACCTCTAACACATCTCTTTATTCAGTTGATAGTTTTTTGGCACAAGATCTAGGATCTATTTCCTGGTCTGGGCTAACAAACGATGAGATTGATACATTGGAAAGAGAGACTGCTTGTACAATCGCCGATGATTTGGTTGAAGAATTCACAAAGGATATGCTCTTGTAG 2505 0.3956 MGGLLHMFEFNQGRMAKKIHAHKNNNDDMETSGNGMKLQVETSQVHCAEGELQYSCQVEDGWSKKISHSNVDSVKKANKEGFSKQSGARSNAPSLVARLMGIDTMPLPLDTKSVVPLDESTHENMERKFSKKKMNGKGWFGRGSSNLNSFSHMEFDSFYQHIDDDDEDDEGGHSFGEPEPREHPQEEELQKFKKDFEEYQSTRFKEWPKAVDIGSGSRRMLSLSQENLSKENMQHISSSKTDSHSFKKKESFPSRSKTQSRDFEESLMMKSKSRLLDICTSPTQIVILKPGSERICNCNHEENFKSLHRRKGIEDFLEEVRERLKCELQGIRASGIETPFNDKSDAKEVRESMTRDAEPNLLRSESTRSYKSKMQLNGQSSPEFFNIDTRRFLSERLRNTVKNELHLDIPEVACYLENDRVRLKQDTIKGPDDKSQWGVLKEKKELQTCSNRHKLDDNVFLHKELSPRNLERSLSAPASGASFGRLLLEDRHILTGALIQRKLEAVEARPVGAKKQKKDGLNIKEKLSNFKYTLGLRRKLFGKRIMSKVESHGSEYGEILRDARSGPTILMKYGGRHENSTEVPPSPASVSSCADEEHWRQIGYSSLTSTPDASSLDDIFVPKIFRDISSGLNDLKRQLSELDSDGYVDFTRKQDPIESSLVELDGPEESYVRDLLVASGLYFGSWEKYIGNSVFEEVEESHRKLVKEDERSKKDDNKNKLEHKVLLDLLNEALSIVLGPPLTLSRFRRKLSNSSMQPPPCGKELLKLVWDIVRVSLHPTSNTSLYSVDSFLAQDLGSISWSGLTNDEIDTLERETACTIADDLVEEFTKDMLL* 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0216 834 PANTHER RB1-INDUCIBLE COILED-COIL PROTEIN 1 833 - -
Vra7g0216 834 MobiDBLite consensus disorder prediction 231 263 - -
Vra7g0216 834 MobiDBLite consensus disorder prediction 162 188 - -
Vra7g0216 834 MobiDBLite consensus disorder prediction 241 263 - -
Vra7g0216 834 Pfam DUF761-associated sequence motif 87 106 IPR032795 -
Vra7g0216 834 PANTHER RB1-INDUCIBLE COILED-COIL PROTEIN 1 833 - -
Vra7g0216 834 MobiDBLite consensus disorder prediction 174 188 - -
Vra7g0216 834 Pfam Domain of unknown function (DUF4378) 669 827 IPR025486 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0216 Vra-Chr7 3233941 3239179 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0216 74 832 TRM (TON1 Recruiting Motif) Superfamily AT2G17550 35.644 4.07e-118 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0216 - - gmx:100810825 1263.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0863 11 7284697 7290513 Vra7g0216 7 3233941 3239179 PCT