Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0214 ATGCCGAAGGTTAAAGCTGATGCTAAAGCTGCCGATAACAGGTTGAAGCGCAAGGGCGCTGGCGCTGGTAGGAAACAATCAAAGAAAGCTGCTAAGGATCCTAATAAGCCGAAAAGACCTCCAAGTGCTTTCTTCGTTTTCATGTCTGAGTTCAGAGAGCAGTTCAAGAAGGAACATCCAAACAACAAATCTGTTGCTGTTGTTGGCAAAGCTGGTGGTGACAAATGGAAATCTCTGTCTGACGCGGAAAAAGCACCATTCATTGCTAGGGCCGAGAAGAAAAAGGAAGAGTATGAAAAGAGTATCTTGGCTTATAATAAGAAATTGGAAGGAAAAAATTCCGAGGAAGAAGAGTCCGACAAGTCGAAATCCGAAGTTAACGACGAGGAGGAAGATGAGGAGGATGATGAAGATGATGAGTGA 423 0.4397 MPKVKADAKAADNRLKRKGAGAGRKQSKKAAKDPNKPKRPPSAFFVFMSEFREQFKKEHPNNKSVAVVGKAGGDKWKSLSDAEKAPFIARAEKKKEEYEKSILAYNKKLEGKNSEEEESDKSKSEVNDEEEDEEDDEDDE* 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0214 140 Coils Coil 88 132 - -
Vra7g0214 140 CDD HMGB-UBF_HMG-box 37 91 - -
Vra7g0214 140 MobiDBLite consensus disorder prediction 1 42 - -
Vra7g0214 140 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 37 106 IPR009071 -
Vra7g0214 140 MobiDBLite consensus disorder prediction 122 140 - -
Vra7g0214 140 SMART hmgende2 36 107 IPR009071 -
Vra7g0214 140 MobiDBLite consensus disorder prediction 105 140 - -
Vra7g0214 140 MobiDBLite consensus disorder prediction 1 19 - -
Vra7g0214 140 Gene3D High mobility group box domain 21 123 IPR036910 -
Vra7g0214 140 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 4 138 IPR031061 -
Vra7g0214 140 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 4 138 - -
Vra7g0214 140 Pfam HMG (high mobility group) box 37 106 IPR009071 -
Vra7g0214 140 SUPERFAMILY HMG-box 28 110 IPR036910 -
Vra7g0214 140 MobiDBLite consensus disorder prediction 105 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0214 Vra-Chr7 3217508 3218990 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Vra7g0214 HMG_box 2.8e-23 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0214 K25507 K22507 gmx:100305957 197.593