Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0206 ATGGGAATCTGCTTCTCCGGTGCTCCATCACTTCATTCCTCTTCACTCAACCGCCCTCACTATTCAGGTGCATCAGACATTCACGGCAACATCGTCGATATCTCCGAAACCACAACCACCGAGATCAGAAAGTACCGGTTTTCTGTGAGAGAAGACATCTACAGCGATCGCTCTCCTCTTCCTTTTACCGATAGCCAAATTCTGAAATGGCCTGAGTTGAAGGTGTTCAGTTTTGAGGAGCTGAAATCTGCCACAGGAAATTTTAAATCCGACAGATTGGTCGGTGAAGGTGGGTTTGGCAGAGTTTACAAGGGATGGTTGGATGAGAACACCCTCACCCCCGCCAAACCAAGCTCTGGAGTTGAAGTTGCCATCAAAATGTTCAAACCGGGAGGTACTCAAGGGTTTACACAGTGGCAGTCTGAGGTAAACGTTTTAGGAAGACTTTCTCACCCCAATGTGATCAGGTTATTGGGGTACTGTTGGGACGAGGATCAGTTTCTTCTTGTGTATGAGTTCATGCCAAACGGAAGCCTCGAGTGGCATCTCTTCAAAAGAAATCATGGCATGGAACCCCTTTCGTGGAACACCCGGCTTAAAATAGTTATCGGTGCAGCTCGGGGATTAGCTTTCTTGCATACCAACGAAAATAACGTCATATTCAGAGATTTCAAGACCTCAAATATACTGCTGGACGGGAATTACAATGCAAAATTAGCAGACTTTGGGTTGGCTAAATTGGGACCATCTGAGGGACAATCACATGCAACTACCGCGGTCATGGGCACCGATGGTTATGCTGCTCCAGAATATATGACAACAGATTTTGGCTTGGCTAAATTGGAACCGTTTGAGGGACAGTCACATGTAACTACCAGTGTGATGGGCACCTATGGTTATGCTGCACCAGAATATGTCGCAACAGGGCACTTGTATGTGAAGAGTGATGTGTATGGATTTGGTGTAGTGCTTCTTGAAATACTTACAGGCATGAGGGCACTTGACACAAGAAGGCTAACAGGGAAGCAGAACCTGGTTGAATGGACCAAGCCCTATCTCTCTTCCAAAAAAAAGTTGAAAAGAATTATGGATGATAAGATAGAGGGTCAATATTCACCCAAAGCTGCATTAGAATTAGCACAACTTGCTTTAAAATGCCTAGAGCATGACCCTAAACAACGTCCTTCAATGAAAGAAGTTCTTGAAGGATTGGAAGCCATTGAAAATATGCATTGA 1236 0.449 MGICFSGAPSLHSSSLNRPHYSGASDIHGNIVDISETTTTEIRKYRFSVREDIYSDRSPLPFTDSQILKWPELKVFSFEELKSATGNFKSDRLVGEGGFGRVYKGWLDENTLTPAKPSSGVEVAIKMFKPGGTQGFTQWQSEVNVLGRLSHPNVIRLLGYCWDEDQFLLVYEFMPNGSLEWHLFKRNHGMEPLSWNTRLKIVIGAARGLAFLHTNENNVIFRDFKTSNILLDGNYNAKLADFGLAKLGPSEGQSHATTAVMGTDGYAAPEYMTTDFGLAKLEPFEGQSHVTTSVMGTYGYAAPEYVATGHLYVKSDVYGFGVVLLEILTGMRALDTRRLTGKQNLVEWTKPYLSSKKKLKRIMDDKIEGQYSPKAALELAQLALKCLEHDPKQRPSMKEVLEGLEAIENMH* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0206 411 Pfam Protein kinase domain 274 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g0206 411 Pfam Protein kinase domain 89 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g0206 411 PANTHER OS01G0588500 PROTEIN-RELATED 47 274 - -
Vra7g0206 411 PANTHER OS01G0588500 PROTEIN-RELATED 274 410 - -
Vra7g0206 411 ProSitePatterns Protein kinases ATP-binding region signature. 94 126 IPR017441 GO:0005524
Vra7g0206 411 SUPERFAMILY Protein kinase-like (PK-like) 274 405 IPR011009 -
Vra7g0206 411 PANTHER SERINE/THREONINE-PROTEIN KINASE PIX13-RELATED 274 410 - -
Vra7g0206 411 PANTHER SERINE/THREONINE-PROTEIN KINASE PIX13-RELATED 47 274 - -
Vra7g0206 411 Gene3D Phosphorylase Kinase; domain 1 60 173 - -
Vra7g0206 411 SUPERFAMILY Protein kinase-like (PK-like) 57 273 IPR011009 -
Vra7g0206 411 Gene3D Transferase(Phosphotransferase) domain 1 174 273 - -
Vra7g0206 411 ProSiteProfiles Protein kinase domain profile. 88 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g0206 411 Gene3D Transferase(Phosphotransferase) domain 1 274 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0206 Vra-Chr7 3091641 3094492 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0206 74 410 Receptor kinase-like Gene Family AT4G02010 42.647 3.71e-85 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vra7g0206 Pkinase 5.1e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0206 - - gmx:100820454 522.316