Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0199 ATGGGAGGTGACAGTGCCGTTGTTGAGGAATTCGAAGGAGTCAGCGTCAACATCAATGTTCGCTGCTCTAACGGCTCTAAGTTTTCCGTTCAGACTTCCGTTGATTCCATCGTTAGTTCTTTCAAGGATCTCGTTGCTCGCAATTGCGACGTACCCGTCGAACAACAACGCCTCATTTACAAGGGTCGCATTTTGAAGGACGATCAAACCCTCCGAAGCTACGGATTGGAGGCAGATCACACTGTCCATTTGGTTCGTGGTTTTGTACATACTAATCCAACTGGTGGAACCAGTACTAGCAGCACTGATACCAATACCGCCACTAATAATGCCAGAGGTGCTGTTGCGAATGAAGGTGGGAGTTTAGGAGGGCCTGGCTTTGGAGCTTCACTGTTCCCTGGACTAGGTATCAATGGGACTGGGGGAAATGCTTTATTTGGTGACGGATTTCCTGATCTAGAGCAGATGCAGCAACCATTTCTTTCAAATCCCAATTTAGTGAGAGAAATAATGAATTCGCCTGCCATGCAGAATCTAATGAATAATCCTGAGATAGTGCGGACTCTTATCATGAATAATCCACAGATGCAAGAGCTCATGGATCGAAACCCTGAGTTAGCACACATACTTAATGATCCTAGTACTCTTCGTCAGACCCTTGAAGCTACAAGGAACCCTGAGATCATGCGTGAAATGATGAGAAATACAGATAGAGCAATGAGCAATATTGAATCTTCTCCTGAGGGATTCAACATGCTGAGGCGCATGTATGAAAATATTCAAGAACCGTTTTTGAATGCCACTACAATGGCTGGTAATACAGGAAATAATAATGCACCAATTCCAGGGACTCATGGTGGCCATGCCAGGGACCAATCAACTAATCCCTCAATTACTAGTTCTGAAGCAGCTGCTGGTTCTCCCTTACCTAATACTAACCCACTTCCAAATCCTTGGTCCTCTACTGGTACTGGAGGTGCTCAAAATAACACCAGAAGGTCGACGACCACTGGTGTGGATGCCAGGCAGCAAGGACCTACTGGCTTAGGAGGCCTTAATCTGCCAGATCTTGAAAACATGCTGGGTGGCAATGCCATGCCAGATGCTTCTTTATTGAGCCAGTTAATGCAAAATCCAGCTATTTCACAAATGATGCAAAGTATGCTTTCCAACCCACAAACCTTGAATCAGATTCTGGGTGCTAATACCGAGCAGCGTGGCATGCCTGATTTAAATTCTCTTAGAGACGTAATGCAAAATCCAGAATTCCTTCGCATGTTTTCATCACCTGAGACATTGCAGCAACTCTTGTCATTCCAGCAAGCTCTTATGTCTCAGCTTGGTCAGCAGCAGTCAACACGCAGGGAATCTGGTCAAACCGGCGGAGGCACTGGACCAATGAACAACTTGGGATTGGAGATGTTATCGAGTATGTTTGGTGGACTTGGAGCAGGTAGCCTAGCTGTTCCAAATAGATCAAATGAGCCACCAGAGCAATTGTATGCCTCCCAACTTTCACAGCTTCAAGAGATGGGATTCTTTGACACGCAAGAAAACATAAGAGCTCTTGTTGCTACTTCGGGTAATGTTCATGCAGCAGTTGAACGACTATTGGGGAACTCTGGTCAGTAG 1632 0.4565 MGGDSAVVEEFEGVSVNINVRCSNGSKFSVQTSVDSIVSSFKDLVARNCDVPVEQQRLIYKGRILKDDQTLRSYGLEADHTVHLVRGFVHTNPTGGTSTSSTDTNTATNNARGAVANEGGSLGGPGFGASLFPGLGINGTGGNALFGDGFPDLEQMQQPFLSNPNLVREIMNSPAMQNLMNNPEIVRTLIMNNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENIQEPFLNATTMAGNTGNNNAPIPGTHGGHARDQSTNPSITSSEAAAGSPLPNTNPLPNPWSSTGTGGAQNNTRRSTTTGVDARQQGPTGLGGLNLPDLENMLGGNAMPDASLLSQLMQNPAISQMMQSMLSNPQTLNQILGANTEQRGMPDLNSLRDVMQNPEFLRMFSSPETLQQLLSFQQALMSQLGQQQSTRRESGQTGGGTGPMNNLGLEMLSSMFGGLGAGSLAVPNRSNEPPEQLYASQLSQLQEMGFFDTQENIRALVATSGNVHAAVERLLGNSGQ* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0199 543 ProSiteProfiles Ubiquitin domain profile. 16 85 IPR000626 GO:0005515
Vra7g0199 543 SMART uba_6 501 539 IPR015940 -
Vra7g0199 543 Pfam Ubiquitin family 18 85 IPR000626 GO:0005515
Vra7g0199 543 MobiDBLite consensus disorder prediction 288 343 - -
Vra7g0199 543 Gene3D - 188 246 - -
Vra7g0199 543 MobiDBLite consensus disorder prediction 447 466 - -
Vra7g0199 543 PANTHER UBIQUILIN 11 543 - -
Vra7g0199 543 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 495 540 IPR015940 -
Vra7g0199 543 CDD UBA_PLICs 501 539 - -
Vra7g0199 543 Gene3D - 483 543 - -
Vra7g0199 543 Gene3D - 13 98 - -
Vra7g0199 543 SUPERFAMILY Ubiquitin-like 15 103 IPR029071 -
Vra7g0199 543 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2A-RELATED 11 543 - -
Vra7g0199 543 Pfam UBA/TS-N domain 501 537 IPR015940 -
Vra7g0199 543 CDD Ubl_Dsk2p_like 16 88 - -
Vra7g0199 543 SUPERFAMILY UBA-like 497 539 IPR009060 GO:0005515
Vra7g0199 543 MobiDBLite consensus disorder prediction 268 351 - -
Vra7g0199 543 MobiDBLite consensus disorder prediction 447 468 - -
Vra7g0199 543 SMART CBM 193 232 IPR006636 -
Vra7g0199 543 SMART CBM 345 398 IPR006636 -
Vra7g0199 543 SMART CBM 139 180 IPR006636 -
Vra7g0199 543 SMART CBM 401 436 IPR006636 -
Vra7g0199 543 SMART ubq_7 16 87 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0199 Vra-Chr7 3003221 3015896 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0199 16 85 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 28.571 8.89e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0199 K04523 - gmx:100776447 934.095
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0849 11 7125284 7131060 Vra7g0199 7 3003221 3015896 PCT