Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0196 ATGGCTCATCTGAGCCACAAGACCTTGAATTATCTTCCTGAAACTCTGTCTGAACATGAAGCTGAGGAAGCCCAACCTGATAGTGTTGGTTCCTTTTCGTTTTGGCCTCCTCATTTGGAGAAAGTTTTCCCCGTTTATGCCATGGGAATTCCCAACCCTGTCTTGGATTCTTCACTTCAAAATTCAGATTGTTTTGATCCTATCTGGGATGATGTCAGAAAAGAAGCACAGTTAGAGGCAGAAAGGGAGCCAATTTTAAGTAGCTTCTTCTATGCCACTATTCTGTCTCATGATTGCTTGGAGCAAGCATTAGCTTTTGCTTTGGCCAACCGACTCCAAAAGCCTACTCTTTTGGCCACGCAGCTGATGGATATATTTTCTACTGTGATGAAGCATGATAAAGGTATCCAACATTCGATTCGCTTGGATATTCAGGCATTTAAAGATCGCGATCCTGCTTGTTTGTCATATTGCTCAGCACTTTTATATATGAAGGGTTATCAGTCTTTGCAAGTACATCGAGTAGCTCATGCTTTGTGGGGCCAGGGTCGCAAAGTTTTAGCCTTAGCTTTGCAAAGTCGAGTTAGTGAGGTTTTTGGAGTTGATATACATCCAGCTGCGAAAATTGGGAATGGAATTTTAGTAGATCATGGGACAGGTGTTGTTATTGGTGAAACTGCTATAATTGGAAACAGAGTTTCACTGATGCAAGGTGTAACTTTGGGTGGCACTGGAAAGGAAACAGGTGATCGGCATCCCAAAGTTGCTGAAGGTGTGCTCATTGGAGCTCATGCAACTATACTTGGGAATTTACAAGTTGGTGAATGTGTGATGATAGCTGCTGGTTCCGTTGTGTTACAAGATGTTCCTCCTCACAGCATTGTGGCTGGTGTACCAGCAAAGGTTATTGGAAGAGTACGTGAGCATTATCCATCCTTGAACATGCAGCAAGACAGATGA 960 0.4302 MAHLSHKTLNYLPETLSEHEAEEAQPDSVGSFSFWPPHLEKVFPVYAMGIPNPVLDSSLQNSDCFDPIWDDVRKEAQLEAEREPILSSFFYATILSHDCLEQALAFALANRLQKPTLLATQLMDIFSTVMKHDKGIQHSIRLDIQAFKDRDPACLSYCSALLYMKGYQSLQVHRVAHALWGQGRKVLALALQSRVSEVFGVDIHPAAKIGNGILVDHGTGVVIGETAIIGNRVSLMQGVTLGGTGKETGDRHPKVAEGVLIGAHATILGNLQVGECVMIAAGSVVLQDVPPHSIVAGVPAKVIGRVREHYPSLNMQQDR* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0196 319 SUPERFAMILY Trimeric LpxA-like enzymes 67 312 IPR011004 -
Vra7g0196 319 CDD LbH_SAT 199 299 IPR045304 -
Vra7g0196 319 Pfam Serine acetyltransferase, N-terminal 68 171 IPR010493 GO:0005737|GO:0006535|GO:0009001
Vra7g0196 319 PANTHER SERINE ACETYLTRANSFERASE 15 318 - -
Vra7g0196 319 ProSitePatterns Hexapeptide-repeat containing-transferases signature. 261 289 IPR018357 GO:0016740
Vra7g0196 319 TIGRFAM cysE: serine O-acetyltransferase 140 301 IPR005881 GO:0005737|GO:0006535|GO:0009001
Vra7g0196 319 Gene3D Hexapeptide repeat proteins 202 319 - -
Vra7g0196 319 PANTHER SERINE ACETYLTRANSFERASE 2-RELATED 15 318 - -
Vra7g0196 319 Gene3D serine acetyltransferase, domain 1 53 201 IPR042122 -
Vra7g0196 319 SMART SATase_N_2_a 68 172 IPR010493 GO:0005737|GO:0006535|GO:0009001
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0196 Vra-Chr7 2974367 2976847 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0196 39 318 Miscellaneous Gene Families AT2G17640 69.286 1.99e-134 383
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0196 K00640 - gmx:100778586 555.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0844 11 7054352 7058863 Vra7g0196 7 2974367 2976847 PCT
Vra7g0196 7 2974367 2976847 Vra11g1031 11 9348047 9351096 PCT