Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0178 ATGAGTGCAAGTTCTTATGGTTTCCCTATTCCATCATCGCTCTTGCCAAGCGATGCATCTCCCGAGTGGAACAACAAAGCAGATAATGCATGGCAACTAACGGCAGCAACCTTAGTGGGCCTTCAGAGCGTTCCTGGGCTTGTGATCCTGTACGGCAGCATGGTTAAGAGAAAATGGGCTGTGAACTCAGCCTTCATGGCCCTATACGCCTTTGCTTGTGTCCTCATTTGTTGGGTTTCATGGGCCCATGGCATGGCATTTGGGACTGAGCTTATGCCATTCGTGGGAAAGCCCAACCACGCTCTGAGTGGGAAGTTTCTGCTTGCGAAGTCAAGTGCTGGGTACTTTCCAATGGCTGACTTCGTGTTCTATCAATTTGCTTTTGCCGCAATCACTGTAGTGTTGCTTGCAGGGTCTTTGCTGGGGAGAATGAACTTCTATGCGTGGATGTTGTTTGTTCCTTTGTGGCTTACGTTCTCTTACACTGTTGGTGCATTCAGCATATGGGACAAATATGGCTTCCTTGAGGGAAAAATAATAGATTATGCTGGTGGATTCGTCATTCATTTGTCTTCTGGCATTGCAGGTTTCACAGCTGCTTATTGGGTTGGTCCAAGAATTTCATACGACAGGCAAAACTTTCCACCAAACAACATAATTCACGTGCTGGGAGGTGCAGGGTTTTTGTGGATGGGTTGGACAGGTTTTAACGGTGGAGCTACTTTCCGAGTGGGAGAAATTGCATCGTTGGCGATCTTCAACACCCATCTATGTACTGCAACAAGCCTACTGGTTTGGCTTACATTGGACATGATTGTATATACCAAGAGCTCAGTCATAGGAGCCGTACAGGGAATGATCACTGGCCTCGTCTGCATCACACCAGGTGCAGGCTTGGTGGATTCATGGGCAGCAGTATTGATGGGAGTTTTGTCTGGTTCGATTCCATGGTACACTATGATGGTGTTACACAAAAAATCAGCATTCTTTCAGAGTGTGGACGATACATTAGGAGTGTTTCACACTCATGCCGTGGCTGGTCTTCTTGGGGGTCTTCTTTCTGGCGTGTTTGCAAAACCCAAGCTTCTAAGAATAATGTATAACGATGATGAGTATGGCCCAGGCTTAATCTATAGTTTTTCTAAGGGATTTAGGCAAATATGGTACCAGTTACTTGGAGCAGGTTTTATTATTGTTTGGAATGTGGTTGTTACTAGCCTGGTTTGTGTTCTTATAAGCCACATTGTGGATCTTAGGATGCAAGAAGAGGAGCTTGAGGTTGGTGATGATGCTGCTCATGGGGAAGAAGCATACGCATTGTGGGGTGATGGAGAGAGAATCAGAGTCCCTCTTCGTCTCCATATAAGTCCAACCATTCCTTCTCTCTGCCGCCGAAGCTTTTCTATTCCTCTCACCGTCTAG 1422 0.4627 MSASSYGFPIPSSLLPSDASPEWNNKADNAWQLTAATLVGLQSVPGLVILYGSMVKRKWAVNSAFMALYAFACVLICWVSWAHGMAFGTELMPFVGKPNHALSGKFLLAKSSAGYFPMADFVFYQFAFAAITVVLLAGSLLGRMNFYAWMLFVPLWLTFSYTVGAFSIWDKYGFLEGKIIDYAGGFVIHLSSGIAGFTAAYWVGPRISYDRQNFPPNNIIHVLGGAGFLWMGWTGFNGGATFRVGEIASLAIFNTHLCTATSLLVWLTLDMIVYTKSSVIGAVQGMITGLVCITPGAGLVDSWAAVLMGVLSGSIPWYTMMVLHKKSAFFQSVDDTLGVFHTHAVAGLLGGLLSGVFAKPKLLRIMYNDDEYGPGLIYSFSKGFRQIWYQLLGAGFIIVWNVVVTSLVCVLISHIVDLRMQEEELEVGDDAAHGEEAYALWGDGERIRVPLRLHISPTIPSLCRRSFSIPLTV* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0178 473 PANTHER AMMONIUM TRANSPORTER 7 467 - -
Vra7g0178 473 Gene3D Ammonium transporter AmtB like domains 15 441 IPR029020 -
Vra7g0178 473 PANTHER AMMONIUM TRANSPORTER MEP2 7 467 IPR001905 GO:0008519|GO:0016020|GO:0072488
Vra7g0178 473 TIGRFAM amt: ammonium transporter 28 438 IPR001905 GO:0008519|GO:0016020|GO:0072488
Vra7g0178 473 SUPERFAMILY Ammonium transporter 23 419 - -
Vra7g0178 473 ProSitePatterns Ammonium transporters signature. 181 206 IPR018047 GO:0008519|GO:0016020|GO:0072488
Vra7g0178 473 PRINTS Rhesus blood group protein signature 125 141 IPR002229 GO:0005887
Vra7g0178 473 PRINTS Rhesus blood group protein signature 220 238 IPR002229 GO:0005887
Vra7g0178 473 PRINTS Rhesus blood group protein signature 251 273 IPR002229 GO:0005887
Vra7g0178 473 PRINTS Rhesus blood group protein signature 344 360 IPR002229 GO:0005887
Vra7g0178 473 Pfam Ammonium Transporter Family 30 438 IPR024041 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0178 Vra-Chr7 2748855 2750511 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0178 118 446 Inorganic Solute Cotransporters AT2G38290 60.182 1.56e-134 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0178 K03320 - gmx:100815876 865.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g0557 7 9351020 9354560 Vra7g0178 7 2748855 2750511 PCT