Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0174 ATGGAGTCTGAGCCAAATCAATGCCCTTTGACGGCTTCCTTCGGGAATTTCGTTGAGAAGGTCAAAAGGGTCGGTACCCTCTTCGTCTCTGCCATCGTTGGAAACATCTTATCTGCGATCTTGACCTTCTGCTTTGCATTAGTGGGCACTTTGTTGGGGGCTATGACTGGAGCCTTGATAGGTCAAGAGACAGAGAGTGGCTTCATTCGAGGGGCTGCTGTTGGTGCCATATCAGGAGCTGTTTTCTCCATTGAAGTGTTTGAATCTTCCATTGTTCTTTGGAAATCTGACGATTCTGGAATTGGGTGTGCCTTATACTTGATTGATGTTTTTGCAAGCCTTTTGAGTGGAAGACTAGTGCGTGAAAGAATAGGTCCAGCCATGTTGAGTGCTGTCCAAAGCCAGATGGGTGCTGTTGAAATAAGCTTTGACGAGGTTCAAAACCTCTTTGATATTGGTGTGGCCAAAGGCTTACCGAGAGATTCAGTTGAAAAGATCCCAACAATCACAATTACAAGTGACAACAATGTTGATGCTTCTGGGGAGAGAGCTTCATGTTCTGTTTGCCTCCAGGACTTTCAGCTTGGAGAGACTGGTAGAAGTTTGCCTCATTGTCATCACATGTTTCACCTATCTTGCATTGACAAGTGGCTGATCAAGCATGCTTCTTGTCCATTATGCCGAAGGGATCTGTAA 696 0.454 MESEPNQCPLTASFGNFVEKVKRVGTLFVSAIVGNILSAILTFCFALVGTLLGAMTGALIGQETESGFIRGAAVGAISGAVFSIEVFESSIVLWKSDDSGIGCALYLIDVFASLLSGRLVRERIGPAMLSAVQSQMGAVEISFDEVQNLFDIGVAKGLPRDSVEKIPTITITSDNNVDASGERASCSVCLQDFQLGETGRSLPHCHHMFHLSCIDKWLIKHASCPLCRRDL* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0174 231 CDD RING-H2_PA-TM-RING 186 228 - -
Vra7g0174 231 PANTHER RING/U-BOX SUPERFAMILY PROTEIN-RELATED 12 231 - -
Vra7g0174 231 Pfam Ring finger domain 185 228 IPR001841 -
Vra7g0174 231 ProSiteProfiles Zinc finger RING-type profile. 186 228 IPR001841 -
Vra7g0174 231 SUPERFAMILY RING/U-box 185 231 - -
Vra7g0174 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 151 231 IPR013083 -
Vra7g0174 231 SMART ring_2 186 227 IPR001841 -
Vra7g0174 231 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 12 231 IPR044523 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0174 Vra-Chr7 2693390 2695432 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0174 18 231 C3H Transcription Factor Family AT5G66070 71.963 6.35e-109 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0174 - - gmx:100816939 415.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0812 11 6715398 6717855 Vra7g0174 7 2693390 2695432 PCT