Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0171 ATGCTATCAAGGTTGATGGACTTTCTGACTGCCTGCTGGCGGCGAAGATCCTCCGACGGCAAGGGTTCCGAGGTTACGGGGCGGAAGGACGGGCTGCTGTGGTACAAGGATGCCGGGCAGCACTTGTTTGGTGAATACTCAATGGCTGTTGTTCAGGCCAACAACTTGCTTGAGGATCAGAGTCAGATTGAGTCTGGTCCTCTTAGCTTGCTTGAGACTGGTCCTTACGGTACCTTTGTTGGTGTGTACGATGGCCACGGTGGACCTGAGACGTCACGCTACGTTTGTGATCATCTCTTCCAACATCTTAAACGATTTGCGTCCGAGCAGAAGTCCATGTCAGTGGAGGTTATTCGGAAGGCATACCAAGCCACAGAAGAAGGTTTTTTGTCAGTGGTTACTAAACAGTGGCCTATGAATCCCCAAATTGCTGCTGTGGGATCTTGTTGTTTGGTTGGTGTGATTTGTGGTGGTATCCTCTACATTGCTAACCTGGGTGATTCCCGTGCTGTGCTTGGGCGGGTTGTCAGAGCGACTGGGGAAGTTTTGGCCATCCAGCTTTCGTCTGAGCATAATGTGGGCATAGAATCTGTGCGACAGGAGATGCATTCTTTGCATCCTGATGACTCCAAAATTGTGGTTCTAAAACACAACGTATGGCGGGTGAAGGGTCTCATACAGATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATTCAACAAGGAACCACTGTATGCCAAGTTTCGTGTACGGGATGGTTTTAAGAGGCCGATTTTGAGCTCTGACCCATCAATTTCTGTTCATGAACTTCAATCGCACGATCAATTTCTTATATTTGCTTCTGATGGTCTTTGGGAACACCTTAGCAATCAAGATGCCGTTGATATAGTTCAGAACAACCCACAGAATGGAATTGCTCGAAGGCTCATCAAAGCTGCTTTGCAGGAAGCAGCTAAAAAGAGAGAGATGAGGTACTCCGATTTGAAGAAAATTGATCGTGGTGTCCGCAGGCATTTCCACGATGACATCACAGTAGTAGTTGTATTTCTTGACTCCAATCTTGTCAGCAGAGCCAGCTCAGTAAGAGGTCCTCCTTTATCGGTGAGAGGAGGTGGTGTTCCCCTTCCTTCTAGAACTTTGGCTCCCTGTGCTGCACCGATGGAAACTTAG 1179 0.4775 MLSRLMDFLTACWRRRSSDGKGSEVTGRKDGLLWYKDAGQHLFGEYSMAVVQANNLLEDQSQIESGPLSLLETGPYGTFVGVYDGHGGPETSRYVCDHLFQHLKRFASEQKSMSVEVIRKAYQATEEGFLSVVTKQWPMNPQIAAVGSCCLVGVICGGILYIANLGDSRAVLGRVVRATGEVLAIQLSSEHNVGIESVRQEMHSLHPDDSKIVVLKHNVWRVKGLIQISRSIGDVYLKKAEFNKEPLYAKFRVRDGFKRPILSSDPSISVHELQSHDQFLIFASDGLWEHLSNQDAVDIVQNNPQNGIARRLIKAALQEAAKKREMRYSDLKKIDRGVRRHFHDDITVVVVFLDSNLVSRASSVRGPPLSVRGGGVPLPSRTLAPCAAPMET* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0171 392 ProSiteProfiles PPM-type phosphatase domain profile. 42 353 IPR001932 -
Vra7g0171 392 SUPERFAMILY PP2C-like 54 354 IPR036457 -
Vra7g0171 392 SMART PP2C_4 37 351 IPR001932 -
Vra7g0171 392 Pfam Protein phosphatase 2C 78 322 IPR001932 -
Vra7g0171 392 ProSitePatterns PPM-type phosphatase domain signature. 79 87 IPR000222 GO:0043169
Vra7g0171 392 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN 5 384 - -
Vra7g0171 392 CDD PP2Cc 43 353 IPR001932 -
Vra7g0171 392 Gene3D - 33 363 IPR036457 -
Vra7g0171 392 PANTHER ALPHABET, ISOFORM E-RELATED 5 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0171 Vra-Chr7 2671592 2677616 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0171 1 381 PP2C-type Phosphatase Gene Family AT3G51370 79.003 0.0 632
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0171 K01102 - gmx:100777920 765.377