Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0143 ATGGCGGAAGAAAGATTCACGGGCGTTGTGCAGTGGTTCAACAATGGAAAAGGCTTCGGGTTCATCAAGCCTGACGACGGCGGCGAGGATCTCTTCGTCCATCAGTCCTCCATCAGATCCGACGGTTACCGCACTCTCCTCGAGGGCGATCACGTCGAGTTCGCTATCGCCACCGGCGACAATGACAAGACCAAGGCCGTTGACGTCACCGGAATCGACGGCGCCCCTCTCCAGCCCCGCGCCGCCTCCGGCAATCGTGGCTCTGGGTACGGATTTGGCTCCAGGCGGAATGGCGCGGGCGGTGGCGGTGCCGCGTGCTATCAGTGTGGCGATTTCGGCCATCTGGCTAGGGACTGCAACCGAAGCAGCAATTCCGGCGGCGGAGGCGGTGGTGGGTGCTTTGTTTGCGGCGGGTTCGGTCACCTCGCGAGGGATTGCGTGCGCGGAGGCAACGGCGGAGGAGGAGGCGGAGGCAACGGTGGTTCTTGCTTTAGGTGTGGCGGATTTGGACACATGGCGAGGGATTGCGCGACTGCGAAGAGCGTCGGTGGTGGTGGTGGTGGTGGTAATGGTGGTGGTTGTTTTCGGTGTGGGGAGGTTGGTCATTTGGCTAGGGATTGCGGCACTGAAGGAGGAAGGTACGGCGGAGGTAACAGTGGTGGTGGTGGTGGCGGAGGAAGGTACGGCGGAGGTAACAGTGGTGGTGGTGGTGGCGGTGGTGGGAAGAGCACCTGCTTTAATTGTGGGAAGCCTGGGCATTTTGCGAGGGAGTGTGTTGAGGCTTCCGTGTGA 792 0.6162 MAEERFTGVVQWFNNGKGFGFIKPDDGGEDLFVHQSSIRSDGYRTLLEGDHVEFAIATGDNDKTKAVDVTGIDGAPLQPRAASGNRGSGYGFGSRRNGAGGGGAACYQCGDFGHLARDCNRSSNSGGGGGGGCFVCGGFGHLARDCVRGGNGGGGGGGNGGSCFRCGGFGHMARDCATAKSVGGGGGGGNGGGCFRCGEVGHLARDCGTEGGRYGGGNSGGGGGGGRYGGGNSGGGGGGGGKSTCFNCGKPGHFARECVEASV* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0143 263 Pfam Zinc knuckle 105 119 IPR001878 GO:0003676|GO:0008270
Vra7g0143 263 Pfam Zinc knuckle 132 146 IPR001878 GO:0003676|GO:0008270
Vra7g0143 263 Pfam Zinc knuckle 244 258 IPR001878 GO:0003676|GO:0008270
Vra7g0143 263 Pfam Zinc knuckle 162 177 IPR001878 GO:0003676|GO:0008270
Vra7g0143 263 Pfam Zinc knuckle 193 207 IPR001878 GO:0003676|GO:0008270
Vra7g0143 263 ProSiteProfiles Zinc finger CCHC-type profile. 163 176 IPR001878 GO:0003676|GO:0008270
Vra7g0143 263 ProSiteProfiles Zinc finger CCHC-type profile. 133 146 IPR001878 GO:0003676|GO:0008270
Vra7g0143 263 Gene3D - 1 82 IPR012340 -
Vra7g0143 263 ProSiteProfiles Zinc finger CCHC-type profile. 245 258 IPR001878 GO:0003676|GO:0008270
Vra7g0143 263 PANTHER COLD SHOCK PROTEIN 2 1 94 - -
Vra7g0143 263 PANTHER COLD SHOCK PROTEIN 2 94 127 - -
Vra7g0143 263 PANTHER COLD SHOCK PROTEIN 2 122 225 - -
Vra7g0143 263 PANTHER COLD SHOCK PROTEIN 2 229 262 - -
Vra7g0143 263 Gene3D - 102 154 - -
Vra7g0143 263 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Vra7g0143 263 SMART csp_8 7 72 IPR011129 GO:0003676
Vra7g0143 263 CDD CSP_CDS 7 71 IPR002059 GO:0003676
Vra7g0143 263 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Vra7g0143 263 PANTHER COLD SHOCK DOMAIN PROTEIN 2 229 262 - -
Vra7g0143 263 PANTHER COLD SHOCK DOMAIN PROTEIN 2 122 225 - -
Vra7g0143 263 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 94 - -
Vra7g0143 263 PANTHER COLD SHOCK DOMAIN PROTEIN 2 94 127 - -
Vra7g0143 263 SUPERFAMILY Retrovirus zinc finger-like domains 228 258 IPR036875 GO:0003676|GO:0008270
Vra7g0143 263 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
Vra7g0143 263 ProSiteProfiles Zinc finger CCHC-type profile. 194 207 IPR001878 GO:0003676|GO:0008270
Vra7g0143 263 SMART c2hcfinal6 244 260 IPR001878 GO:0003676|GO:0008270
Vra7g0143 263 SMART c2hcfinal6 193 209 IPR001878 GO:0003676|GO:0008270
Vra7g0143 263 SMART c2hcfinal6 105 121 IPR001878 GO:0003676|GO:0008270
Vra7g0143 263 SMART c2hcfinal6 162 178 IPR001878 GO:0003676|GO:0008270
Vra7g0143 263 SMART c2hcfinal6 132 148 IPR001878 GO:0003676|GO:0008270
Vra7g0143 263 ProSiteProfiles Zinc finger CCHC-type profile. 106 119 IPR001878 GO:0003676|GO:0008270
Vra7g0143 263 SUPERFAMILY Retrovirus zinc finger-like domains 153 210 IPR036875 GO:0003676|GO:0008270
Vra7g0143 263 Gene3D - 158 184 - -
Vra7g0143 263 Gene3D - 239 262 - -
Vra7g0143 263 SUPERFAMILY Retrovirus zinc finger-like domains 99 148 IPR036875 GO:0003676|GO:0008270
Vra7g0143 263 Gene3D - 185 222 - -
Vra7g0143 263 SUPERFAMILY Nucleic acid-binding proteins 4 74 IPR012340 -
Vra7g0143 263 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Vra7g0143 263 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Vra7g0143 263 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0143 Vra-Chr7 2412324 2413638 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Vra7g0143 CSD 2.9e-24 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0143 K09250 - gmx:100806783 358.992