Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0127 ATGGAAGAGCAAAGTAATGAAGAGAACCCTCTGCAACTAAGAACTTGTGACACTGGGGGCACAACCAATGATGTCTCTCACTCAACTGAGGGTCATCTCATTCCCAACCCAAATTTTTTCATTGCAGCATCATCTGGAAGAAATGAGAACCACTGGACTTGCTTTCCAAAACCATGCCATAACTATGTTAAGTATCTTTCAGAATCCTCAACTTATCTGCCAAACACTTCCACTGATTACATGATGGGGGGTAGTTATCTGCCTGTTGGCAGCATCACTGATGGCAACGTGGTTAATGGATCAGACAAAAACTTCTTTTACAATGATCCAGGGAAAGTTTGTGCCTTTAAGTCTATTGGTTCTTCAAGTAATGACCTTGACATTAAGAAGCAGGTGGGGTTTTGGAGGGCTGATGAAGGAGAGGAAGTGATTAAAGTTGAAACTGAAAGCAGTCAAAATTTTCTTTATGCTGAGAGTCATCCTTTATGGACAGCAGATTCTCTTGGAGATAAGCATAATGCTTTACATGATCCAATGGTAATGGTTGGTGCACCTGCTTCACTTCCTAAATCAGGATCCAACTCCTCAAAAGAGAAAGCACGTGTCACTGACCGTCAACGTAGGCAACGTATCGCTGATAACCTCAAAGCCTTACATGAATTGCTTCCAAATCGAACAGAGGGAAGTCAAGCATACATACTGGACGATATTATTGACTTTGTCAAATATTTACAGCTTCAAATAAAGGAACAAAGTGGAAGTAGATTGCAAGAAGAATCAACTGGTATACCACTAGTTTTTCATGAGGGTTATGGTCATTATATCAACCAACAGATGCTGAATGAACCCCTTGAGGAGATAATGGGGAAACTACTTGAAGAACATTCTGCAGCAGCTGGTCAGCTACTAGAGAGCAAGGGTCTTTTCCTGCTGCCTATGGCTTTGGTTGATGATTTGAATGAGGCTATGCAAACATTTGGCGAGAGTGCTCTAGTCTGA 999 0.4154 MEEQSNEENPLQLRTCDTGGTTNDVSHSTEGHLIPNPNFFIAASSGRNENHWTCFPKPCHNYVKYLSESSTYLPNTSTDYMMGGSYLPVGSITDGNVVNGSDKNFFYNDPGKVCAFKSIGSSSNDLDIKKQVGFWRADEGEEVIKVETESSQNFLYAESHPLWTADSLGDKHNALHDPMVMVGAPASLPKSGSNSSKEKARVTDRQRRQRIADNLKALHELLPNRTEGSQAYILDDIIDFVKYLQLQIKEQSGSRLQEESTGIPLVFHEGYGHYINQQMLNEPLEEIMGKLLEEHSAAAGQLLESKGLFLLPMALVDDLNEAMQTFGESALV* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0127 332 MobiDBLite consensus disorder prediction 185 206 - -
Vra7g0127 332 MobiDBLite consensus disorder prediction 1 30 - -
Vra7g0127 332 PANTHER TRANSCRIPTION FACTOR BHLH66-LIKE ISOFORM X1 16 316 - -
Vra7g0127 332 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 195 254 IPR036638 GO:0046983
Vra7g0127 332 MobiDBLite consensus disorder prediction 8 30 - -
Vra7g0127 332 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 16 316 - -
Vra7g0127 332 SMART finulus 201 250 IPR011598 GO:0046983
Vra7g0127 332 Pfam Helix-loop-helix DNA-binding domain 197 245 IPR011598 GO:0046983
Vra7g0127 332 CDD bHLH_AtbHLH_like 203 250 IPR045239 -
Vra7g0127 332 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 195 244 IPR011598 GO:0046983
Vra7g0127 332 Gene3D - 193 262 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0127 Vra-Chr7 2252012 2255535 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0127 202 322 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G30980 38.211 1.06e-19 87.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra7g0127 HLH 1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0127 - - gmx:100788949 464.922