Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0121 ATGAAGCGAGCAAGGAAATCCAACCGGGTTTCGTGGGCCACTGGAGGGAACCTGTGTCAGGTGAAATTGTTTTTGTCTGACGATTTCCCCTCAAAAGTAGGCCAACATTCGCAAGATCATCTTCAAGTAAAGACATCGATGCTAAATTCAAATTCCGCCATTAATGATCATACCGATTTGCCCCCTGGGTTTGAAAGCAGTCATTTCCTAAAACAAACAAGAGTTGATTTGTCCTGCATTTCCCAGATAAAATGGGAATGTGCTCCGCCGTTTATTCTCAATCCTGAATGGCGTGTTGTGGCGGGTGAAGAAAGCAGGGAGAAAGAAAATCAGAAAGCGAGAGAAAATAGGGTGCTTGAAGCTGTTTATCCCCGTCTTTCAGCCATTCCTCCTAGCCCTTCTGTCTCTTTGGACGTAGAAGAGGAAGATTATGATGATGACGATACTCCCCTCATCCCTATCATTCCCATTGAAGAGGAAGAACCTGTGGATATTTTACCTGAAGTGGCAGTAGCTGGGAACCCTTTCCCCAATGTGCAGCCGAATAACCCTCTGCAATATGTATCTGCTGAAACTTCCATTCGTTCACCCTCAAATGCCTTTTATACTGATTCCTCGGATCCCTGTACAGGGATCCCCTTGGGTGGGGGGGTATCTTTCGGTATGGAAGCTGATTTGGCAGCTTCGGTTGTTGCAACCATTATGAGGAGTTCAGAGCAGGGATCCCCGATTGATATGGATTTACTGGTTAAAATATTTAATGATCCCAAAATGCTCGACAAGTTGATTAATGAACATAGAACTGCAGCAACCACCACAAGTGCTTCCACAAGTACTGTGGATACAACTCCTGGTGTTAAGCCTGACACTCCAGTTCTGTTGTCTATATCTGATGTGAAAGCTTCGGGGGCTACACCTACAAGTGCAGTGGGTTCATTGCCTTTTGGTCTGAAAACTACATATCCATCAGTTTCAGTATTGAGTCCTACACCTGACAAATCATCCACTAGGTCAGTGCCTGCAGTTCCATCAGTCTCAGTGTTCTCTCCGGCTCATGATAATCCAGTCACTGCATCAGTTCCATTGTCTAGGCCTTTATCTGGTAAGCCAGGAACACCCTCAGTTTCATTGCTCACAAATACACCTGCATCTCATATACCCAGGTCTGTTAGCAAACAAATTCACCATGTGTCAGGTGGTATTTCCCCTGCATTAAATACTCAGCCTCAGCAAGATACAGCTCTGGCATCTGGGCCAAAGCGAGCCGCTGCAATGGCTGGTGAATTAAGCACTGGTCCAGTGCCATCTCTTACCAGGAACTTGCATGCTGTTGTGAATCCGGTGCAATCCCCTGCTAGTACATTGCCTTATAAACTAAGCACAGGTTCATCAGCATTTGCTGTAAAGGATGCCAACTACTATAAAAACCTCATCAGGCAACATGGGGCAGATAAGCAAGATATGCAGGACTCACACATAGGTATTCGTCATAGTTATCTCCACGATTTGAAACCGGTACCTAACTTTAAACAAGGAGAAGTGAAACACAAAATCCAGAAACCATGCATATATTTTAAAAGCTCAAAAGGGTGCCGAAATGGTTCCAATTGCCCCTTTCAGCACGATGTTTCAGCTCAGTGGGGAGCTGGTAACATCTTAGGGGCACAGAGTGCAAAAAGATTGAAATCGGGACCATAG 1698 0.4517 MKRARKSNRVSWATGGNLCQVKLFLSDDFPSKVGQHSQDHLQVKTSMLNSNSAINDHTDLPPGFESSHFLKQTRVDLSCISQIKWECAPPFILNPEWRVVAGEESREKENQKARENRVLEAVYPRLSAIPPSPSVSLDVEEEDYDDDDTPLIPIIPIEEEEPVDILPEVAVAGNPFPNVQPNNPLQYVSAETSIRSPSNAFYTDSSDPCTGIPLGGGVSFGMEADLAASVVATIMRSSEQGSPIDMDLLVKIFNDPKMLDKLINEHRTAATTTSASTSTVDTTPGVKPDTPVLLSISDVKASGATPTSAVGSLPFGLKTTYPSVSVLSPTPDKSSTRSVPAVPSVSVFSPAHDNPVTASVPLSRPLSGKPGTPSVSLLTNTPASHIPRSVSKQIHHVSGGISPALNTQPQQDTALASGPKRAAAMAGELSTGPVPSLTRNLHAVVNPVQSPASTLPYKLSTGSSAFAVKDANYYKNLIRQHGADKQDMQDSHIGIRHSYLHDLKPVPNFKQGEVKHKIQKPCIYFKSSKGCRNGSNCPFQHDVSAQWGAGNILGAQSAKRLKSGP* 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0121 565 ProSiteProfiles Zinc finger C3H1-type profile. 517 544 IPR000571 GO:0046872
Vra7g0121 565 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 45-RELATED 1 562 - -
Vra7g0121 565 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 1 562 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0121 Vra-Chr7 2173776 2180992 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0121 82 173 Homeobox Transcription Factor Family AT4G02560 41.053 1.58e-06 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vra7g0121 zf-CCCH 0.00026 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0121 - - pvu:PHAVU_003G260700g 760.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0765 11 6238349 6241319 Vra7g0121 7 2173776 2180992 PCT