Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0120 ATGAGAACACGAAATGCTGATCCCGCTTCCAAATCCGCAACCCCTAAGAAGACGCCACCGCCGAGGAAATCCCCTGCGGCGAAGCGCACACCCGCCACCAAAACCAGAAGCACAAAGAAGAAAGAGGTCTCACCCGCAACCGATTCCAAAACTGATCAATCTCCTGTGGAGCAGAAACCGGTAGCTAGTGGTAGCAGTACAAAAACTTCGAAAAAAAGGGCTCCAGGGAGACCTAGAGTTAAAGCAATTGATACTCCGAATTTGGAAGAACAACGTGAGGCAGTAGCTGATGAAACTCCTATTGAAGACAAAACCGAGGCTGCAGAAAAAGTGGAGGATGTTGAAGTTGCTGATACAACTAATATTGAGGTCGAGAAAGAGGGGGAACAAGGTGTTGGGTTTTCTGAAGAGAAGGAACAGAAGTGGATGGAAGTGGATGAACCTGTTGTTGAAAAGGGGAATGACATAATGGAAGTTGAAGTAACTGCTTCACAGGATGTTTCTGTTTCTTTTCAGCGACTACGACGGCCCATTATGGACCTCAATATATCTGCAGATAATGAAGATTGTATTGGTGAAAAGGAGGGAGAGAAAGCAAAGGAAGTGTTCAAAGATCAAGAGGGGGACAAAGGAAAGGAGAAGTTGAAAGAACAGGAAGGAGATGGAGGGAAGGAAGAGGTGAAAGTGCATGAAGGGGACAAAGGAGAGGAAGAGTTGAAAGAACTGGAAGGAGACAAAGGAATGGAAGAGTTGAAAGAACTGGATGGGGAGAAAGAAAAGGAAGAGTTGAAAGAACATGAAGGGCAGAAAGGTAAGGAGGAATTGCTAGAACGGGAAGGAGAGAAAGGTAAAGAAGAGACGATAGAACAAGAAGGACATAAAGTTCAGGTTGAATTGAAAGAACAGGAAGTAGAAAAAGGGAAGTTGAAAGAGCAGGATCCAGAGAAAGCAGAGGGAGAGGAAACAAACCTTTTTGGACATGAAGAGAACACTGAGTCGCTTGGTCTAGAAGTGAAAGCCCCGGTGCAAACAGAAGGTGCTAATCCCATTAAAGATGATGGTGAAGGACCCAAGAGTGGTAAAAAGTTAGATCTTCGAGGACAAGGGGAGGTGGAGCTTGCTGAAGAAGATCCGGAGGAAGATCCAGAAGAAGATCCAGAAGAACCTCTAGATGAAATTGGGACTTTGGAGGAGGAACATAGGGAATTGGAGGCCATTGCAAATCAGCGAAAGATTAAAAAAGAGCATGAGATCTTTGTTGGTGGGTTGGATCGTGATGCTACAGAGGAAGATCTGAGAAAGGTTTTCCAGAGGATGGGGGAGATACTTGAAGTCAGGTTGCATAAAAATTCTTCAACAAATAAAAACAAGGGCTATGCTTTTGTGAAGTTTGCTAATAAGGAGCATGCTAAGAAAGCTTTGTCTGAAATGAAGAACCCTGTTATACGTGGTAAACGGTGTGGCACTGCACCTAGTGAGGATAATGACACATTATTCTTGGGAAATATTTGCAATACTTGGACAAAAGAAGCTATTAGACAGAAGCTGAAGGACTATGGTATTGAAGGGGTTGAAAACATTACGCTTGTCCTAGATGTTCAACATGAGGGCTTGAGCCGGGGTTTTGCATTTGTAGAGTTCTCTTGTCATGCAGATGCCATGCTTGCATATAAGAGGCTTCAAAAGCCTGATGTTATCTTTGGCCATGCTGAACGAACTGCCAAGGTAGCCTTTGCTGAACCCATGCGTGAACCTGACCCAGAGATAATGGCACAGGTGAAGTCTGTGTTTATTAATGGTCTCCCTCCACACTGGGACGAAGATCATGTGAGGGAGCTATTCAAATCTTATGGTGAAATTGTAAGAATCGTCTTAGCACGGAATATGTCTACTGCTAAGAGGAAGGATTATGGATTTGTTGATTTTTTTACACACGAAGCTGCTGTAGCTTGTGTTGATGGTGTAAATAAATCAGAAATGGGTGATGCGGCATCAAAGATAAAAGTGAGAGCTAGACTTTCAAACCCTCTGCCTAAAACACAGGCTGTCAAAGGTGGTATGTGTGGTGGGTTCCGAATTGGTCATGCTAGGAGTGCAGCCTTTTCAAGACCAGTCCCTACTAGAGGGAGGGGGTTTGGACGAGGAAGGCAGCCCTTCAACAACAGGGGAAATTTCAACAGGGATAAGAGTTTCTATCACGGTGGACACAGTCAAATTGGAAGAATGGGTTTTCGGGATGACCTTGATTTTAATATGCATCCAGATTTCCGACAAAGGCAATTTGGTCCACAAGGAGCTGTGAGGGGTGGACATTATGCTGGTACCCGAGCTGCTCCATTTGCTGGACCGACTAGACCTTATCATGACAGAGCATGGTATGGTATGCCTGATGGAGGTCCCAGTGAGCCTATTCCTCCAAGGAGGACCTACTCCCCTGGTGGACAATTTGACATGCCTTTTATGGGAAGACATTTTGATGATCCATATCTATATGATGACAATATGCATGGAATGAAACGTCCGTTTTATATGACTGACCCTGAATCTGATTACATGGGGCCTAATAGACTTCGTCCCCGATTGGATTATGCAGATCCTCCTATATTTCATGGAACTCGTCACCATGATTCTTTTGGGTCTGGCAGCGGACAGTACCCGCCTGACTACTATGCTTCCGATTACGGTAGAGGTTCATATTCATCTTATTATGGGGGTGATGGCTCACATGGACATGGATACTATTATTAA 2748 0.4451 MRTRNADPASKSATPKKTPPPRKSPAAKRTPATKTRSTKKKEVSPATDSKTDQSPVEQKPVASGSSTKTSKKRAPGRPRVKAIDTPNLEEQREAVADETPIEDKTEAAEKVEDVEVADTTNIEVEKEGEQGVGFSEEKEQKWMEVDEPVVEKGNDIMEVEVTASQDVSVSFQRLRRPIMDLNISADNEDCIGEKEGEKAKEVFKDQEGDKGKEKLKEQEGDGGKEEVKVHEGDKGEEELKELEGDKGMEELKELDGEKEKEELKEHEGQKGKEELLEREGEKGKEETIEQEGHKVQVELKEQEVEKGKLKEQDPEKAEGEETNLFGHEENTESLGLEVKAPVQTEGANPIKDDGEGPKSGKKLDLRGQGEVELAEEDPEEDPEEDPEEPLDEIGTLEEEHRELEAIANQRKIKKEHEIFVGGLDRDATEEDLRKVFQRMGEILEVRLHKNSSTNKNKGYAFVKFANKEHAKKALSEMKNPVIRGKRCGTAPSEDNDTLFLGNICNTWTKEAIRQKLKDYGIEGVENITLVLDVQHEGLSRGFAFVEFSCHADAMLAYKRLQKPDVIFGHAERTAKVAFAEPMREPDPEIMAQVKSVFINGLPPHWDEDHVRELFKSYGEIVRIVLARNMSTAKRKDYGFVDFFTHEAAVACVDGVNKSEMGDAASKIKVRARLSNPLPKTQAVKGGMCGGFRIGHARSAAFSRPVPTRGRGFGRGRQPFNNRGNFNRDKSFYHGGHSQIGRMGFRDDLDFNMHPDFRQRQFGPQGAVRGGHYAGTRAAPFAGPTRPYHDRAWYGMPDGGPSEPIPPRRTYSPGGQFDMPFMGRHFDDPYLYDDNMHGMKRPFYMTDPESDYMGPNRLRPRLDYADPPIFHGTRHHDSFGSGSGQYPPDYYASDYGRGSYSSYYGGDGSHGHGYYY* 916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0120 915 CDD RRM_SF 498 561 - -
Vra7g0120 915 Gene3D - 495 580 IPR012677 -
Vra7g0120 915 MobiDBLite consensus disorder prediction 77 145 - -
Vra7g0120 915 SMART rrm1_1 417 490 IPR000504 GO:0003723
Vra7g0120 915 SMART rrm1_1 595 668 IPR000504 GO:0003723
Vra7g0120 915 SMART rrm1_1 497 574 IPR000504 GO:0003723
Vra7g0120 915 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 594 674 IPR000504 GO:0003723
Vra7g0120 915 CDD RRM_SF 418 486 - -
Vra7g0120 915 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 294 908 - -
Vra7g0120 915 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 416 494 IPR000504 GO:0003723
Vra7g0120 915 Gene3D - 582 741 IPR012677 -
Vra7g0120 915 MobiDBLite consensus disorder prediction 192 327 - -
Vra7g0120 915 PANTHER NUCLEOLIN-LIKE ISOFORM X1 294 908 - -
Vra7g0120 915 Gene3D - 351 490 IPR012677 -
Vra7g0120 915 MobiDBLite consensus disorder prediction 351 372 - -
Vra7g0120 915 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 498 566 IPR000504 GO:0003723
Vra7g0120 915 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 596 662 IPR000504 GO:0003723
Vra7g0120 915 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 418 486 IPR000504 GO:0003723
Vra7g0120 915 MobiDBLite consensus disorder prediction 702 730 - -
Vra7g0120 915 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 496 581 IPR000504 GO:0003723
Vra7g0120 915 MobiDBLite consensus disorder prediction 48 71 - -
Vra7g0120 915 SUPERFAMILY RNA-binding domain, RBD 584 678 IPR035979 GO:0003676
Vra7g0120 915 SUPERFAMILY RNA-binding domain, RBD 417 561 IPR035979 GO:0003676
Vra7g0120 915 MobiDBLite consensus disorder prediction 1 145 - -
Vra7g0120 915 MobiDBLite consensus disorder prediction 192 390 - -
Vra7g0120 915 CDD RRM_SF 596 670 - -
Vra7g0120 915 MobiDBLite consensus disorder prediction 373 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0120 Vra-Chr7 2158715 2168989 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0120 417 662 Eukaryotic Initiation Factors Gene Family AT1G71770 25.097 2.95e-17 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0120 - - gmx:100784338 1283.86