Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0117 ATGACTAAATTTCTCATCCTACTGTTATTGTGTGCACGCTTCTTATCATGCGCCCACTGCGGCTCTGTCACCGAGATCCAAGCCTTGACGTCGTTCAAGCTCAACCTTTACGACCCTCTCGGCGCGCTTAACGACTGGGACCCATCAACGCCGTTAGCTCCTTGCGACTGGCGTGGGGTTTCTTGCAAGAACGACCGAGTCACCGAGTTACGTCTGCCTCGCCTTCAACTCACTGGCCTACTTGCTGACCGCATTTCAGACCTACGCATGCTTCGAAGGCTCAGCCTTCGCTCCAACTCCTTCAACGGCACAATTCCCCAATCCCTCTCCAAATGCACGCTCCTACGCTCCTTGTTCCTACAGGATAACGACCTCTCCGGCCAACTCCCGCCGGAGATTGGAAACCTCGCCGCTCTCCAGATTCTCAACGTTGCCGGCAACAACCTCTCTGGTCAAATCCCCGCCGAACTTCCCTTCCATCTCAAATACGTTGACCTCTCCGCCAACGCCTTCTCCGGCCAGATTCCGACCACCATCGCCGGTCTTTCCGAGCTTCAGCTTATCAACCTCTCCTACAACAAGTTCTCGGGCCAGATTCCTGAGCGCATTGGAGAGCTTCAGAACCTGCAATACCTTTGGCTCGATCACAATGTTCTCGGTGGAACCTTACCTTCATCTCTCGCGAATTGTTCCTCGCTCGTGCATTTGAGCGTGGAAGGGAACGCGCTTGCCGGCGTGTTACCGGCTGCGATTGCGGCCCTCCCGAACCTTCAGGTGTTGTCGCTCGCGCAGAACAACTTCACCGGCGCCGTTCCGGCTTCCGTTTTCTGCAACGTGTCGCTCAAAGCGCCGTCACTTCGCATCGTTCAGTTAGGGTTTAACCGTTTCACGGATTTCGCGTGGCCTCAAGCCGCCACGTGTTTCAGTGTTCTTGAGGTTTTGGATATTCAGCAAAATGGCGTGCGCGGCATGTTTCCGCTGTGGCTAACCAACGTGACGACGTTGTTGGTTCTCGACATTTCCGGTAACGCACTTTTCGGCGAGGTTCCGCCGGAAATTGGAAATCTCTGGAAATTGGAAGAGCTGAAGATGGCCAATAATTCGTTCTCAGGCGAGATTCCGCCGGAATTAGTAAAATGTAGGTCCCTGCGTGTTCTTGATTTTGAAGGAAACCGGTTTTCCGCTGAGGTTCCTTCGTTTATAGGAAATCTGACAGCGCTGAAGGTTCTATCTCTTGGTGTGAACCATTTCTCTGGTTCTGTTCCGGTGAGTTTTGGTGGGCTTGTTTCTCTTGAAACTATGAGTTTAAGAGGTAATAGATTGAATGGTTCAATGCCAGAGGAATTGATGGGGTTGAAGAATTTGACAGTGTTGGACCTCAGTGTAAACCAGTTTTCTGGTCATGTTTCTGCGGAAATTGGGAATCTGAGTAAATTAATGGTTCTGAATCTGAGTGGTAATGACTTCAATGGAGAAATTCCTTCTACTTTGGGGAATCTTTTCAGGCTCACAACTCTTGATTTGAGCAAACAAAATCTCTCCGGTAAATTGCCATATGAAATTTCGGGGCTTCCCAGTTTGCAGGTCATTGCTCTTCAAGAGAACAAGTTGTCTGGGGTGATACCTGAAGGGTTTAGCAGCTTGATCAGTTTGAAATACGTAAACCTAAGCTCTAACGACTTTTCTGGGTATGTTCCTAAAAGCTATGGCTTTCTCCGATCTTTGTCTGTTCTTTCATTGTCTAATAACCGCATCATGGGAGTGATTCCCCCGGAAATTGGAAACTGCCCTGACATTGAAGTTCTCGAGCTTAGATCAAATTACTTCGGAGGTCCCATTCCCGCCGATCTCTCTAGTCTAGCTCATTTGAAAGTCCTTGATTTAGGTAAGAACAACTTAACTGGGGCTTTGCCAGAGGATATCTCCAAATGCTCAGAGTTAACCGTTGTGTTAGCAGATCACAACGAACTTTCGGGTGCTATACCAGGGTCATTGGCCAAGTTATCACACCTAACTGTGCTGGATCTCTCTGCCAACCAATTGAGTGGCGAAATCCCCAGTAATCTAAACACCATCCCCGGTTTGGTGTACTTCAATGTCTCAGGCAACAAATTAGAGGGTGAGATTCCACCAATGTTGGGTTCTAAATTCAACGACTCCTCTGTATTTGCAAGCAACCAGAACTTGTGCGGGAAGCCATTGGATAGAAAGTGCGAAGAGACAGACAATAGAGAGAGAAATAGGTCGATAGTGTTAATCATTATCATCGCGGTTGGAGCTTGCTTATTGGCATTGTGTTGCTGCTTCTACATCTCCAGCCTTCTGAGATGGCGCAGAAGGATCAAAGCAGCAGTGTCAGGGGAGAAGAAAAAGAGTCCGAGAACAAGTTCGGGAACAAGTCAAGGTCGAAGCAGCACTGACACCAACGGACCAAAACTCGTTATGTTCAACGCCAAAATCACACTAGCCGAAACAATCGAAGCAACAAGGCAATTCGACGAAGAAAACGTGCTGAGCAGAACAAGACACGGTTTAGTATTCAAGGCCTGTTACAACGACGGAATGGTCCTTTCCATTCGCAAGCTCCCAGACGGGTCACTAGACGAAAACATGTTCAGAAAAGAAGCCGAGTCGTTAGGAAAAATCAGGCACCGAAACCTAACAGTTCTCAGAGGCTACTATGCAGGCCCATCGGATGTTAGACTCTTGGTCTTCGATTACATGCCCAATGGGAACCTCGCAACGTTGCTCCAAGAAGCATCACACCTAGATGGTCACGTTCTGAATTGGCCAATGCGACACCTCATTGCATTAGGAATAGCCCGTGGCATAGCGTTTCTACACCAATCCTCATTTATCCACGGTGACATCAAACCCCAAAACGTGCTCTTTGATGCAGACTTCGAAGCCCATTTATCAGATTTCGGGTTGGACAAGTTAACAGTCACCAACCCAGTCGAAGCCTCCACTTCAAGCACAGCTTCAGTTGGCACGTTGGGTTACGTGTCCCCGGAGGCTGTACTAACAGGGGAACCCACGAAAGAGTGTGACGTGTACAGCTTCGGCATCGTTTTGCTGGAACTTCTCACTGGGAAGAGACCGGTGATGTTCACGCAGGATGAGGATATAGTGAAGTGGGTGAAGAAACAGTTACAGAACGGTCAAATTGCAGAGCTACTAGAGCCTGGTTTGTTTGAACTTGACCCAGAGTCTTCGGAATGGGAAGAGTTCTTGCTGGGTGTGAAAGTTGGTCTGCTTTGCACAGCTCCAGACCCTCTTGATCGACCAACCATGGCTGACATCGTGTTCATGCTCGAAGGTTGTCGTGTTGGACCCGATATTCCATCCTCCGCTGAAACAGCACAACCTTCTCCGGTGTAA 3381 0.4889 MTKFLILLLLCARFLSCAHCGSVTEIQALTSFKLNLYDPLGALNDWDPSTPLAPCDWRGVSCKNDRVTELRLPRLQLTGLLADRISDLRMLRRLSLRSNSFNGTIPQSLSKCTLLRSLFLQDNDLSGQLPPEIGNLAALQILNVAGNNLSGQIPAELPFHLKYVDLSANAFSGQIPTTIAGLSELQLINLSYNKFSGQIPERIGELQNLQYLWLDHNVLGGTLPSSLANCSSLVHLSVEGNALAGVLPAAIAALPNLQVLSLAQNNFTGAVPASVFCNVSLKAPSLRIVQLGFNRFTDFAWPQAATCFSVLEVLDIQQNGVRGMFPLWLTNVTTLLVLDISGNALFGEVPPEIGNLWKLEELKMANNSFSGEIPPELVKCRSLRVLDFEGNRFSAEVPSFIGNLTALKVLSLGVNHFSGSVPVSFGGLVSLETMSLRGNRLNGSMPEELMGLKNLTVLDLSVNQFSGHVSAEIGNLSKLMVLNLSGNDFNGEIPSTLGNLFRLTTLDLSKQNLSGKLPYEISGLPSLQVIALQENKLSGVIPEGFSSLISLKYVNLSSNDFSGYVPKSYGFLRSLSVLSLSNNRIMGVIPPEIGNCPDIEVLELRSNYFGGPIPADLSSLAHLKVLDLGKNNLTGALPEDISKCSELTVVLADHNELSGAIPGSLAKLSHLTVLDLSANQLSGEIPSNLNTIPGLVYFNVSGNKLEGEIPPMLGSKFNDSSVFASNQNLCGKPLDRKCEETDNRERNRSIVLIIIIAVGACLLALCCCFYISSLLRWRRRIKAAVSGEKKKSPRTSSGTSQGRSSTDTNGPKLVMFNAKITLAETIEATRQFDEENVLSRTRHGLVFKACYNDGMVLSIRKLPDGSLDENMFRKEAESLGKIRHRNLTVLRGYYAGPSDVRLLVFDYMPNGNLATLLQEASHLDGHVLNWPMRHLIALGIARGIAFLHQSSFIHGDIKPQNVLFDADFEAHLSDFGLDKLTVTNPVEASTSSTASVGTLGYVSPEAVLTGEPTKECDVYSFGIVLLELLTGKRPVMFTQDEDIVKWVKKQLQNGQIAELLEPGLFELDPESSEWEEFLLGVKVGLLCTAPDPLDRPTMADIVFMLEGCRVGPDIPSSAETAQPSPV* 1127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0117 1126 SUPERFAMILY Protein kinase-like (PK-like) 814 1113 IPR011009 -
Vra7g0117 1126 SMART LRR_sd22_2 452 478 - -
Vra7g0117 1126 SMART LRR_sd22_2 206 229 - -
Vra7g0117 1126 SMART LRR_sd22_2 620 643 - -
Vra7g0117 1126 SMART LRR_sd22_2 254 281 - -
Vra7g0117 1126 SMART LRR_sd22_2 668 691 - -
Vra7g0117 1126 Gene3D Ribonuclease Inhibitor 251 470 IPR032675 -
Vra7g0117 1126 Gene3D Ribonuclease Inhibitor 471 747 IPR032675 -
Vra7g0117 1126 Gene3D Ribonuclease Inhibitor 164 246 IPR032675 -
Vra7g0117 1126 Gene3D Ribonuclease Inhibitor 23 163 IPR032675 -
Vra7g0117 1126 Gene3D Phosphorylase Kinase; domain 1 795 907 - -
Vra7g0117 1126 MobiDBLite consensus disorder prediction 786 811 - -
Vra7g0117 1126 Pfam Leucine Rich Repeat 622 644 IPR001611 GO:0005515
Vra7g0117 1126 Pfam Protein kinase domain 843 1101 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g0117 1126 Pfam Leucine rich repeat 406 465 IPR001611 GO:0005515
Vra7g0117 1126 Pfam Leucine rich repeat 525 585 IPR001611 GO:0005515
Vra7g0117 1126 Pfam Leucine rich repeat 160 219 IPR001611 GO:0005515
Vra7g0117 1126 PANTHER INACTIVE LEUCINE-RICH REPEAT RECEPTOR KINASE XIAO-RELATED 4 1119 - -
Vra7g0117 1126 SMART LRR_typ_2 254 278 IPR003591 -
Vra7g0117 1126 SMART LRR_typ_2 88 112 IPR003591 -
Vra7g0117 1126 SMART LRR_typ_2 404 427 IPR003591 -
Vra7g0117 1126 SMART LRR_typ_2 452 475 IPR003591 -
Vra7g0117 1126 SMART LRR_typ_2 524 547 IPR003591 -
Vra7g0117 1126 SMART LRR_typ_2 572 596 IPR003591 -
Vra7g0117 1126 SMART LRR_typ_2 668 692 IPR003591 -
Vra7g0117 1126 SMART LRR_typ_2 136 160 IPR003591 -
Vra7g0117 1126 SMART LRR_typ_2 476 500 IPR003591 -
Vra7g0117 1126 SMART LRR_typ_2 620 644 IPR003591 -
Vra7g0117 1126 SMART LRR_typ_2 428 451 IPR003591 -
Vra7g0117 1126 SMART LRR_typ_2 206 230 IPR003591 -
Vra7g0117 1126 SMART LRR_typ_2 332 356 IPR003591 -
Vra7g0117 1126 SUPERFAMILY L domain-like 23 328 - -
Vra7g0117 1126 Pfam Leucine rich repeat N-terminal domain 25 62 IPR013210 -
Vra7g0117 1126 SMART serkin_6 832 1104 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g0117 1126 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 4 1119 - -
Vra7g0117 1126 Pfam Leucine Rich repeat 668 684 IPR001611 GO:0005515
Vra7g0117 1126 ProSiteProfiles Protein kinase domain profile. 832 1114 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g0117 1126 MobiDBLite consensus disorder prediction 790 811 - -
Vra7g0117 1126 SUPERFAMILY L domain-like 502 734 - -
Vra7g0117 1126 SUPERFAMILY L domain-like 330 583 - -
Vra7g0117 1126 ProSitePatterns Serine/Threonine protein kinases active-site signature. 952 964 IPR008271 GO:0004672|GO:0006468
Vra7g0117 1126 Gene3D Transferase(Phosphotransferase) domain 1 908 1113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0117 Vra-Chr7 2116459 2120344 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0117 4 1126 Receptor kinase-like Gene Family AT4G36180 65.669 0.0 1438
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-3 Vra7g0117 Pkinase 3.6e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0117 - - vun:114175753 2029.22