Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0108 ATGGAGTGTTTGGAAGCAGTGTTGAAGAGCAGTTTCAGAAAAGACATGGCACTCAAACTCAGCCCCCAAGCGTACACGGAAGACCTTAACATGCAAAACGTGAACTCATGCGACGACTTCTTCGTCGACGACCTTCTCGACTTTTCGCTCCTCGAAAACGAAGAACCCGACCAACACAAACACACCCACCACTCAACCTCCGTTTCCCCTCGCAACGACAACCACCATATGTACAATTGCAACCACTCCTTCAACGACAATTTCAATACCGAACTCACTCTTCCGCCGGAGGAAGTTGCGGACTTGGAATGGGTATCTCATTTCATCGAAGATTCTTTCTCCAAATACTCTCTTTCCTTCCCCGCAACCGTCACGCAGAGCCTCGCCGAGAAACCGCCGGAACCGGGAAACGCCGGTTTTACTTTTAAAACCCTCGTTCCGGCCAAGCCAAGGAGCAAGCGAACCCGAACCGGGGTTCGGGTGTGGCCGCTGAGGTCACCCTCGTCTTTCACCGACACGTCGTCTCCCCGCAGCCCTTTGCTAATTTTCGCAGCCACGTCCAAAGACCACCACCCGGAGGACAAGAGAGCGAAGAAACGGGCGGCGTCGGACGGGGGAGCGGCGAGACGGTGCAGCCATTGCGGCGTTCAGAAAACACCTCAATGGCGAACAGGACCGCTCGGGGCGAAGACCTTGTGCAATGCCTGTGGAGTTCGGTACAAGTCGGGTCGGTTATTGCCCGAGTATAGACCCGCGTGTAGCCCTACTTTCTCGAGCGAGTTGCACTCGAACCACCACCGGAAGGTTTTGGAGATGCGGCAGAAAAAGGAAGCGGGGCCTGGACCGGACACCGGTTCGCCAGCGTCGGTTCCCGGTTTTTGA 882 0.5567 MECLEAVLKSSFRKDMALKLSPQAYTEDLNMQNVNSCDDFFVDDLLDFSLLENEEPDQHKHTHHSTSVSPRNDNHHMYNCNHSFNDNFNTELTLPPEEVADLEWVSHFIEDSFSKYSLSFPATVTQSLAEKPPEPGNAGFTFKTLVPAKPRSKRTRTGVRVWPLRSPSSFTDTSSPRSPLLIFAATSKDHHPEDKRAKKRAASDGGAARRCSHCGVQKTPQWRTGPLGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRQKKEAGPGPDTGSPASVPGF* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0108 293 MobiDBLite consensus disorder prediction 186 205 - -
Vra7g0108 293 Pfam GATA zinc finger 211 245 IPR000679 GO:0006355|GO:0043565
Vra7g0108 293 CDD ZnF_GATA 210 258 IPR000679 GO:0006355|GO:0043565
Vra7g0108 293 SMART GATA_3 205 259 IPR000679 GO:0006355|GO:0043565
Vra7g0108 293 Gene3D - 203 278 IPR013088 GO:0006355|GO:0008270
Vra7g0108 293 PANTHER GATA TRANSCRIPTION FACTOR 1 278 - -
Vra7g0108 293 MobiDBLite consensus disorder prediction 270 293 - -
Vra7g0108 293 PANTHER GATA TRANSCRIPTION FACTOR 1 278 - -
Vra7g0108 293 ProSitePatterns GATA-type zinc finger domain. 211 236 IPR000679 GO:0006355|GO:0043565
Vra7g0108 293 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 204 267 - -
Vra7g0108 293 MobiDBLite consensus disorder prediction 187 205 - -
Vra7g0108 293 PIRSF Txn_fac_GATA_plant 6 285 IPR016679 GO:0003677|GO:0005634|GO:0045893
Vra7g0108 293 ProSiteProfiles GATA-type zinc finger domain profile. 205 241 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0108 Vra-Chr7 2023964 2025829 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0108 5 293 C2C2-Gata Transcription Factor Family AT5G66320 46.921 1.52e-69 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vra7g0108 GATA 3.9e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0108 - - pvu:PHAVU_003G258900g 561.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0749 11 6061235 6062897 Vra7g0108 7 2023964 2025829 PCT