Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0100 ATGGCGGGTTTGTTCTCATTAGGCGGAGGGAGAGGGACTAACAACAACCAGCAAGACAACACTACCAACAACAACGAGATTCCTCCAGCCGAGACCCTATTCTGGTATAGCAAAACCGACGACGTTTCATCCTACCGAGGGTTCGAGCTATGGAACCAGCAGCAGGAGCAGCATGTGATGCCACCGCATGCGCGCCCTCTCCTGCAGCGAGATCTTTACTCCTCCGGTGTCGGACCCAGTCGAGGCGTCTCCGATGATCACTCCTCGTCTAGATCAGCGTTTGTGGCGATGCGCTCGGCGGAGGGTGGAATAAGCTGCCAGGACTGCGGGAACCAAGCCAAAAAAGATTGTCCACACATGCGGTGCAGAACGTGCTGCAAGAGCCGCGGCTACGAGTGCCAAACCCATGTCAAAAGCACTTGGGTTCCCGCTTCCAAACGTCGCGAGCGTCAGCAACAGCTCGCTGCCTTGCAAGAGCAGCAGCAACAACAGAGAGACCTTTCCAAACGGCCAAGGGACCCAACAGCTTGCACTCGTTTGCCCTCGTCAGAAGGGTTAGAAGAAGGGCATTTTCCATCTGTGGTGAGTTCTCCTGCTGAGTTCAGGTGCGTGAGGGTTAGCTGCGTGGAGGATGCTGATGACAGGTATGCATATCAAACGGCTGTGAACATTGGGGGACATCTGTTCAAAGGAATCCTTTATGACTATGGTCCTGAGAATAGCAATAATAATAACAGTAATAATAGTAATAATTACATGGCCGGGGAGACCTCTGCTGGTGTTGCTGGAGCTCAGCCCTTGAACCTCACTGCTTCTGGCGTTGTCACTTCTTCTGGGGCACTTGTTGATCCTTCCTCCTTGTATTCCGCTCCCGTCAACACTTTCATGGGTGGCAGTGGTACGCAATTCTTCCCTCACACAAGATCTTGA 930 0.529 MAGLFSLGGGRGTNNNQQDNTTNNNEIPPAETLFWYSKTDDVSSYRGFELWNQQQEQHVMPPHARPLLQRDLYSSGVGPSRGVSDDHSSSRSAFVAMRSAEGGISCQDCGNQAKKDCPHMRCRTCCKSRGYECQTHVKSTWVPASKRRERQQQLAALQEQQQQQRDLSKRPRDPTACTRLPSSEGLEEGHFPSVVSSPAEFRCVRVSCVEDADDRYAYQTAVNIGGHLFKGILYDYGPENSNNNNSNNSNNYMAGETSAGVAGAQPLNLTASGVVTSSGALVDPSSLYSAPVNTFMGGSGTQFFPHTRS* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0100 309 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 190 238 IPR006511 -
Vra7g0100 309 Coils Coil 147 170 - -
Vra7g0100 309 MobiDBLite consensus disorder prediction 144 192 - -
Vra7g0100 309 MobiDBLite consensus disorder prediction 9 29 - -
Vra7g0100 309 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 309 IPR007818 GO:0003700|GO:0006355
Vra7g0100 309 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 105 147 IPR006510 -
Vra7g0100 309 Pfam Domain of unknown function (DUF702) 103 239 - -
Vra7g0100 309 PANTHER TRANSCRIPTION FACTOR STY-LRP1 FAMILY-RELATED 1 309 - -
Vra7g0100 309 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0100 Vra-Chr7 1848959 1852079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0100 1 309 C2H2 Transcription Factor Family AT3G51060 44.892 8.34e-83 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Vra7g0100 DUF702 1.6e-63 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0100 - - gmx:100781981 439.113