Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0089 ATGGAGTTTGCTAGTTTCCATCTTCAGCATCAGCTTCAAGAAGAATCTGCTCACTCTATAGCTTCAGCAACCCCACCACCTGACCCTAAACCTTCCATCACCACTCATCAATCATGGATCCCAAGCAGCATATACAATGGTTGTAACAGTGGCTTTCTAACTGAGAGCTTTACAAATTCTAGAGAAGTACAGCACAAGCACGCCATGACTGACTCACTTAGAATTTCAACAAGGCAAGCCTTGGGTTTCCACTATGGAAAAAGCCTTGCTCAACAGCCGGTTAGTGATCTCTTTGCAGCAAGAATCAAAGGTGAAATGATGAACACCTCCATGAAGGCTATGGAGGAATCGTGTTCACTAATCCCAATTCATGAACCACGATATCCTCCTAGTTTCTTATCTAGTCTTGGTGTAACTGGTGTAGAGTTTTTTCCTTCGGAGAATGTCTTTCATAATGAGAAACCTATTGATGGAAAGACCATAAGCAAGAGATATAACAACTTTGGAGATGCTAGCTTAATTTCGAATTTACCAACCCTAGATATGACCTCTTCTTTGGTTTCATGTTCTTTGGGTTTAAATCCTAAAATGTTTGATCTGCATACAAGTTACAGTGAGAGTTGTGAAATCCAACCTTGCTATGATGCTTTTGGTCTAAACGAGAACATAGCTTTGTGCCACAGCGACATGCATGGCCGCGAAAATAGTCCATCAAATAGCTCAAAAATTTCATCATTTGTAACTGAAGTTGCAACGACAAAAAGGCCTAGTAGTTGCTCTCTACCAAAAGAATCAGAGGCCAAAGCTAAGAGGTCAAGGCCATCATCATGCCCTCCCCTGAAGCAGATAAGAAAGGAAAAATTGGGGGATAGGATTCAAACTCTTCAAAGATTAGTAGCACCTTTCGGGAAGACCAGTACAGCCTCTGTGTTAAGTGAAGCCATTGGCTACATCCATTTCCTTCACCAACAAATCCAGACTTTGAGCATTCCTTACATGAAATCCACGCAAAGCAATAGAATGGTGCAGCTGAGTACAAATAAAGTAGATAAAGAAGTGAAGGCAGACCTAAGAAGCAGAGGCTTGTGTCTTGTACCCCTTTCTTACGCATCGTTTATTCATCGTTGTGTTTAG 1134 0.4145 MEFASFHLQHQLQEESAHSIASATPPPDPKPSITTHQSWIPSSIYNGCNSGFLTESFTNSREVQHKHAMTDSLRISTRQALGFHYGKSLAQQPVSDLFAARIKGEMMNTSMKAMEESCSLIPIHEPRYPPSFLSSLGVTGVEFFPSENVFHNEKPIDGKTISKRYNNFGDASLISNLPTLDMTSSLVSCSLGLNPKMFDLHTSYSESCEIQPCYDAFGLNENIALCHSDMHGRENSPSNSSKISSFVTEVATTKRPSSCSLPKESEAKAKRSRPSSCPPLKQIRKEKLGDRIQTLQRLVAPFGKTSTASVLSEAIGYIHFLHQQIQTLSIPYMKSTQSNRMVQLSTNKVDKEVKADLRSRGLCLVPLSYASFIHRCV* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0089 377 PANTHER TRANSCRIPTION FACTOR BHLH110-LIKE 1 373 - -
Vra7g0089 377 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 272 321 IPR011598 GO:0046983
Vra7g0089 377 MobiDBLite consensus disorder prediction 14 36 - -
Vra7g0089 377 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 275 335 IPR036638 GO:0046983
Vra7g0089 377 CDD bHLH_AtbHLH_like 284 329 IPR045239 -
Vra7g0089 377 SMART finulus 278 327 IPR011598 GO:0046983
Vra7g0089 377 MobiDBLite consensus disorder prediction 256 282 - -
Vra7g0089 377 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 1 373 - -
Vra7g0089 377 Gene3D - 280 349 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0089 Vra-Chr7 1700612 1703990 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0089 236 372 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27660 49.306 8.73e-32 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0089 - - var:108339505 711.064