Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0066 ATGTTGAGAAGCATAGTCCGTGAACTCAAGGAGATGAGAGATGGAATAGGTAGCACATCTAAGCGGGGTGCAGGTGCAGAAAGCAAGCTTCGGCTCAGTCGAACAAAGTCACATATTGCTCCAGATGTTCTTGCAACTACATTTGAATTTATTCAACAGGGACAATGGGCAAATCTTCCACAAGAATTGCTTTTCGACATAATCCAAAGGGTTGAAGAGAGTGAAACATCTTGGCCTGACCGAGCTGTTGTTGTCTTCTGTGCTTCTGTATGTAAATCTTGGAGGTCGATTACAAAAGAGATTGTCAAAACTCCTGAACAATGTGGAAGGATCACATTTCCTATTTCATTGAAGCAGCCCGGTCCACGTGATTCTCCAATTCAGTGCTTTATAAGGAGGAACAAAGAAAGTTCTACATATCTGTTGTACTTTGGTCTGGTACCATCAGAGAATGACAATAACAAGTTGTTATTAGCGGCCAAAAGGATAAGAAGGGCAACAGGCACTGATTTTGTCATATCCTTGGCCACAGATGATTTTTCCCGAGCCAGCAATAAATATGTTGGTAAACTGAGATCTAATTTTTTGGGTACCAAGTTCACCATACATGACAGTCAACCTCCCCATGATGCTGCAATTCAACCCAATTGTCAATATAGTAGGAGATTTCATTCTAAGCAGGTGTCACCAAGAGTTCCAGCTTGTAGCTACCTTGTTAGCACAGTTTCCTACGAGCTGAACGTCCTTTGCACTAGAGGGCCAAGAAGAATGCATTGTGTCATGAACTCTATACCCGTCTCAGCAATTCAGGAAGGGGGCAACGCCCCAACTCCAACTTCTTTCCCTCAAATATTTGATGAACCTTTTTCTCCATCACCAGCAGCGAAAGAAAAAGTTCCAGTCCCCGATTTAAACTCTGCAAGCTTATCAGAGCCACTAATATCGAGCCAAGTTTCAACTGAGCAATTAGAACTGAAAAACAAGGCTCCACGATGGCATGAGCAGCTACAGTGCTGGTGCCTAAACTTCAAGGGTCGTGTGTCTGTGGCTTCTGTTAAGAACTTTCAGCTTGTAGCTGCTGTTGATCCATCTCATAACATTTCTGCTGAGGAGCAAGACAAGGTAATCCTGCAGTTTGGAAAGATTGGAAAAGACATATTCACCATGGATTACCGTTATCCGCTCTCTACCTTCCAAGCCTTTGCCATATGCTTGAGTAGCTTTGACACAAAACCTGCCTGTGAATGA 1248 0.4319 MLRSIVRELKEMRDGIGSTSKRGAGAESKLRLSRTKSHIAPDVLATTFEFIQQGQWANLPQELLFDIIQRVEESETSWPDRAVVVFCASVCKSWRSITKEIVKTPEQCGRITFPISLKQPGPRDSPIQCFIRRNKESSTYLLYFGLVPSENDNNKLLLAAKRIRRATGTDFVISLATDDFSRASNKYVGKLRSNFLGTKFTIHDSQPPHDAAIQPNCQYSRRFHSKQVSPRVPACSYLVSTVSYELNVLCTRGPRRMHCVMNSIPVSAIQEGGNAPTPTSFPQIFDEPFSPSPAAKEKVPVPDLNSASLSEPLISSQVSTEQLELKNKAPRWHEQLQCWCLNFKGRVSVASVKNFQLVAAVDPSHNISAEEQDKVILQFGKIGKDIFTMDYRYPLSTFQAFAICLSSFDTKPACE* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0066 415 Pfam F-box domain 56 103 IPR001810 GO:0005515
Vra7g0066 415 ProSitePatterns Tub family signature 2. 400 415 IPR018066 -
Vra7g0066 415 SUPERFAMILY Tubby C-terminal domain-like 105 415 IPR025659 -
Vra7g0066 415 PANTHER TUBBY-LIKE F-BOX PROTEIN 2 415 - -
Vra7g0066 415 Pfam Tub family 117 410 IPR000007 -
Vra7g0066 415 ProSitePatterns Tub family signature 1. 343 356 IPR018066 -
Vra7g0066 415 Gene3D Tubby Protein; Chain A 115 415 IPR025659 -
Vra7g0066 415 PRINTS Tubby superfamily signature 171 187 IPR000007 -
Vra7g0066 415 PRINTS Tubby superfamily signature 187 211 IPR000007 -
Vra7g0066 415 PRINTS Tubby superfamily signature 236 263 IPR000007 -
Vra7g0066 415 PRINTS Tubby superfamily signature 325 342 IPR000007 -
Vra7g0066 415 PRINTS Tubby superfamily signature 343 359 IPR000007 -
Vra7g0066 415 PRINTS Tubby superfamily signature 372 391 IPR000007 -
Vra7g0066 415 PRINTS Tubby superfamily signature 393 415 IPR000007 -
Vra7g0066 415 SUPERFAMILY F-box domain 52 100 IPR036047 GO:0005515
Vra7g0066 415 PANTHER TUBBY-RELATED 2 415 - -
Vra7g0066 415 Gene3D - 49 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0066 Vra-Chr7 1411033 1418794 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0066 2 415 TUB Transcription Factor Family AT2G18280 61.429 9.94e-179 502
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Vra7g0066 Tub 1.1e-105 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0066 K19600 - gmx:100805380 763.837
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0700 11 5663561 5666457 Vra7g0066 7 1411033 1418794 PCT