Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0063 ATGGGAACTGATGGCAGTGAACTGGTAGAGACATTACCAAGTCCTTGCTCCTTTAAGGTGCATCGTGGAATGTGCACGGAACTCAGGAAATTAGTTGCTAGAATCCTGCGGATAATTCCACGTATAGAAGAAGCACGCCCTTGCGGAATGCAGGCTCTGTGTTTGCTCAACAGTGCAATTCATAAAGCCGCACAACTCCTGATATACTGCTCTGAATCTAGTAAACTCTACCTGGCAATAACAGGGGATTCCATACTCTCAAAATTTCAAAAGGCAAGACAATCGATAGTAAAAAACTTAGTCCAGATTCTGAATATGGTTCCCGTGATGTTGGCTGCAGAGATTTCTCGACTAATTGGTGATCTTGAGTGTGTTACATTTGTCCTCGACTCAGCTGAAGTGGCAGCAGGAAAGGTTTTGAAGCAATTGCTCCAGCAAGATTCTTCAACATCAGATAAAGATTCAGTGGAAGAATCTGAAACAAAACATTTTCAGTTTGTAGCAGCAAGACTTAATATTACATCCTCATCGGCCATCTTAATAGAGAAACGATCTATTCAGAAGTTGCTAAAAAAGGTAAAACCAGATGGTCAGCCAAAAGAGATTGTCTTGAAAAATCTTTTGTATCTCCTGCTAAAGAACAAAAAATACATCACCGGAGAACAAATTGAGGTCTATTTGCAAAGTGAAGGACCAATCACAACTGAGAACTCAGTTCACGAGTCACAAAGAATCCTTCATGTCGAGTCAGAACCATACTTGAACTATGATCAGCATAGAACTCATGCCAATGAGTTGGACAGACTTACACCTCCTGAGGAATATACATGCCCAATATCTTTAAGGTTGATGTATGACCCTGTTGTCATAGCTTCAGGAGAAACATATGAAAGGATGTGGATACAAAGGTGGTTTGATGAGGGTAATACTATATGCCCAAAAACCAAAAAGAAACTGGATCATATGGCGTTGACTCCAAATGTTGTCTTCAAGGACCTAATATTAAAGTGGTGTGAAACTAATGGAGTCTCCATTCCTGACCCGAGTAGACAAGTGCCACATTTGCACCCATGGGAAGCTTCCTCCAATTCCATTAAGAGTTTTGGAAGTTCTTTGTATGATTTAAACTTCCAAATGGATCTTAGTAACGTGTCACTTGGATCTTTAGACACCAGTTATAAATCAGATTCCTCTCATTCTAATGTCAATCATGGCTTAGATTTAATATTGAACACGAGCAGTGCCAATTCTCGCAGGCACCAATCTCGTGCACGGATTCATGACGTTGATCTGATGCCTTTGTCTAAACTCCATGAACGTCGATGGGAATCTCAATGCCAACTTATTGAAGATATGAGAATAGATTTCAAATGCAATAACCATAGCTTTTGCTCTGTGCCATCTGAGAATTTCGTTGACCCACTCACAAGATTTCTGAGCACTGCCTGTGAGAGGCATGATGTAAAAGCTCTGAGATCTGGAACTAAATTGCTGTTGGAATTTCTGAAGTGCTGCCGCAATGGTATGACCAATTTAACTGAAGATACATGCATTGTGTTGGCAAGTCTTCTTGACACAGAAGTGATCGGTGAAGCTCTTACCATAATGGAAGAGCTGAAAGGAAATTGGTATGAGAAAGCTAACATTGCAGCTTCCACTTTACTCACTTCTGTATCAAAGATCCTTGATTTTGGTAGCAAACAGTTCCAAGGAAAAGCTATTAAAATAATGCTTAACTTTTCATCCAATAGTCAAATGTGTGCCTACATGATATCTCTCGGGTGCATCCCAAAATTACTGCAATTTTTTGGAGACAAAACCCTTTCGAGAGACTGTATACATATTTTGAAAAACCTTTGTGAGACTGAAGAGGGTAAGGTTACTGTGGTTGAAACAAAAGGATGCATATATTCTGTTGTTGAAATACTTGGGACTGGCAGTGACGAGGAAAAAGAACCGGCACTGCTTATTCTACTCTCTTTATGCTCTCAACGAGTGGAATACTGTCAGATGGTTATGGATGAGGGGATTATTCCTTCTCTTGTCGACATCTCCAATTCAGGAAGTGACATGGCAAAGGCCTATGCGCTTGAACTACTCCGTCTTTTAAAGGAAGAGAGAGAGTTTGAGAATGAAGACTGTTATGAGCCAAAATTCAATGCCTCTCAAGAATCTACAAATCGCTATGAAGAAAAGAAATCATCAAAGAAACCTTCCATTTTGAAGAGATTGTCAATCTTCTCAAAATCCAGTTCAGTTGCACCAAATAACAAGAGATGA 2280 0.3996 MGTDGSELVETLPSPCSFKVHRGMCTELRKLVARILRIIPRIEEARPCGMQALCLLNSAIHKAAQLLIYCSESSKLYLAITGDSILSKFQKARQSIVKNLVQILNMVPVMLAAEISRLIGDLECVTFVLDSAEVAAGKVLKQLLQQDSSTSDKDSVEESETKHFQFVAARLNITSSSAILIEKRSIQKLLKKVKPDGQPKEIVLKNLLYLLLKNKKYITGEQIEVYLQSEGPITTENSVHESQRILHVESEPYLNYDQHRTHANELDRLTPPEEYTCPISLRLMYDPVVIASGETYERMWIQRWFDEGNTICPKTKKKLDHMALTPNVVFKDLILKWCETNGVSIPDPSRQVPHLHPWEASSNSIKSFGSSLYDLNFQMDLSNVSLGSLDTSYKSDSSHSNVNHGLDLILNTSSANSRRHQSRARIHDVDLMPLSKLHERRWESQCQLIEDMRIDFKCNNHSFCSVPSENFVDPLTRFLSTACERHDVKALRSGTKLLLEFLKCCRNGMTNLTEDTCIVLASLLDTEVIGEALTIMEELKGNWYEKANIAASTLLTSVSKILDFGSKQFQGKAIKIMLNFSSNSQMCAYMISLGCIPKLLQFFGDKTLSRDCIHILKNLCETEEGKVTVVETKGCIYSVVEILGTGSDEEKEPALLILLSLCSQRVEYCQMVMDEGIIPSLVDISNSGSDMAKAYALELLRLLKEEREFENEDCYEPKFNASQESTNRYEEKKSSKKPSILKRLSIFSKSSSVAPNNKR* 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0063 759 CDD RING-Ubox_PUB 277 317 IPR045210 -
Vra7g0063 759 ProSiteProfiles U-box domain profile. 270 344 IPR003613 GO:0004842|GO:0016567
Vra7g0063 759 PANTHER U BOX DOMAIN-CONTAINING 2 745 - -
Vra7g0063 759 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 745 - -
Vra7g0063 759 SUPERFAMILY RING/U-box 264 348 - -
Vra7g0063 759 SMART Ubox_2 274 337 IPR003613 GO:0004842|GO:0016567
Vra7g0063 759 SUPERFAMILY ARM repeat 459 704 IPR016024 -
Vra7g0063 759 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 254 344 IPR013083 -
Vra7g0063 759 Gene3D - 443 713 IPR011989 -
Vra7g0063 759 Coils Coil 692 712 - -
Vra7g0063 759 Pfam U-box domain 272 341 IPR003613 GO:0004842|GO:0016567
Vra7g0063 759 SMART arm_5 583 621 IPR000225 GO:0005515
Vra7g0063 759 SMART arm_5 622 663 IPR000225 GO:0005515
Vra7g0063 759 SMART arm_5 665 705 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0063 Vra-Chr7 1390604 1396210 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0063 15 728 U-box Gene Family AT4G36550 34.938 1.06e-125 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0063 - - gmx:100798951 1181.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0699 11 5653387 5659071 Vra7g0063 7 1390604 1396210 PCT