Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0060 ATGGACATGAGAGAGCAAGATAAGGTAATAGAGATGCCTACCACTTTGGGTTATAACCTCTCCAATAGAAATTCATCTTCCTCCAAATTATCATCACCAATAGGGGAAAGAAATGACCAACCTCCTCAATCTCAAACGTTGATTTTCAGTGATTCACATCATCACCATCCCCTCAACCCACCAAACCCTCTTCAACTTCCACATCCTCACAGACCCAGAAGAGATCCAGATCCAACTCCTATTTCTCCTCCTGTCATAACCACCCCAAGAACACAACCACACTCAACACCAACATTCAGATACCGAGAATGTCTCAAGAATCATGCTGCCAGCATGGGGGGTCATGTCACAGATGGGTGTGGGGAGTTTATGCCAAATGGAGAAGAAGGCACCCCAGAATCCTTCAAGTGTGCAGCTTGTGAGTGCCACCGCAATTTCCACAGAAAAGAACCTGAAGGCGAATCATCACAACACCATGTTCTCAACTACCACCTCACTTACCCCAACAAAACCAATAGAAACATTGTTATTCATTCTCCGCAATCTCATCTTCAGTTACCTACACCCCACCTTCACGGGTTGGTGGCTACACCTTCAGGTGGGCCGGTTCAGCCCGCGATGTTGGGCTTTGGGGGGACCCCAGCTGAGTCCTCAAGCGAAGATCTCAACATGTTTCAGACCGATGATGCAGGGCAATTATTATCAGCGCAGCCACCACTGTCATCATCCAAGAAGAGGTTCAGGACAAAGTTCTCACAGCAACAAAAGGATAAGATGATGGAGTTTGCTGAGAAACTGGGGTGGAAGATCCAGAGACAAGATGAACAGGAACTGCATCAGTTTTGCTCTCAGGTCGGTGTAAAAAGACAGGTTTTCAAGGTTTGGATGCACAACAGCAAGCAAGCCATGAAGAAGAAGCAAATGTAA 927 0.466 MDMREQDKVIEMPTTLGYNLSNRNSSSSKLSSPIGERNDQPPQSQTLIFSDSHHHHPLNPPNPLQLPHPHRPRRDPDPTPISPPVITTPRTQPHSTPTFRYRECLKNHAASMGGHVTDGCGEFMPNGEEGTPESFKCAACECHRNFHRKEPEGESSQHHVLNYHLTYPNKTNRNIVIHSPQSHLQLPTPHLHGLVATPSGGPVQPAMLGFGGTPAESSSEDLNMFQTDDAGQLLSAQPPLSSSKKRFRTKFSQQQKDKMMEFAEKLGWKIQRQDEQELHQFCSQVGVKRQVFKVWMHNSKQAMKKKQM* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0060 308 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 7 53 306 - -
Vra7g0060 308 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 53 306 - -
Vra7g0060 308 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 101 150 IPR006456 -
Vra7g0060 308 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 100 150 IPR006456 -
Vra7g0060 308 Pfam ZF-HD protein dimerisation region 99 151 IPR006456 -
Vra7g0060 308 MobiDBLite consensus disorder prediction 15 52 - -
Vra7g0060 308 MobiDBLite consensus disorder prediction 1 97 - -
Vra7g0060 308 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 244 301 IPR006455 -
Vra7g0060 308 Gene3D - 231 305 - -
Vra7g0060 308 SUPERFAMILY Homeodomain-like 235 305 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0060 Vra-Chr7 1337519 1339333 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0060 77 308 ZF-HD Transcription Factor Family AT2G18350 47.699 1.99e-64 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vra7g0060 ZF-HD_dimer 5.6e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0060 - - ccaj:109810490 431.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0693 11 5603199 5605965 Vra7g0060 7 1337519 1339333 PCT