Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0056 ATGCATCGTTGTTGCGGGAACTCCCAGGGTCACGTGATGGGCACCTGCACATGCACCATGCTTCACACTGAAACTAACTCTTACTCCATCCTCTTTTCTATGCCCAACACCCACGCTCCCTATTATGATTACGAACATGATGTCTATTCCTCCTACACACCCTCTCCTTCTTCCGTCGACTGCACGCTCTCCCTCGGTACCCCTTCCACGCGTTTCACCGAAGGCGAGGAGTTACGGAACCGCCACGAACCTCGCTCTTCCGTCACCAACTTCCGCTGGGACTTGCTGCAATCCAAACACACCACGCAATCTCAAACCAATAAATCAACCAGAGCAACCAATGCCGCCTCCAACAACGACCCTCTCCTCGCTCGTCGCTGCGCCAACTGCGACACCACTTCTACTCCCCTCTGGAGAAACGGTCCTCGTGGCCCAAAGTCACTATGCAATGCTTGCGGGATCAGATATAAGAAGGAAGAGAGAAGAGCATCGGCTGCCGCGGCCACGTCATCGGCGGTTCCCGGCAGCGTAATGGAATCGTCTCGCTCGTACGGCAACCAAAGCAGTTCGTGGTACTCACACTCGCAGATGGGTAACGAGTTACGTTTCATGGAGGATTCGGACGATAGAGATTCGGAGAATGGCATTCCGTTCTTCTCTTGGAACCTTAACGTTCCAGACCGAACGAGCATGGTACACGACTTCACGAGATGA 714 0.5378 MHRCCGNSQGHVMGTCTCTMLHTETNSYSILFSMPNTHAPYYDYEHDVYSSYTPSPSSVDCTLSLGTPSTRFTEGEELRNRHEPRSSVTNFRWDLLQSKHTTQSQTNKSTRATNAASNNDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEERRASAAAATSSAVPGSVMESSRSYGNQSSSWYSHSQMGNELRFMEDSDDRDSENGIPFFSWNLNVPDRTSMVHDFTR* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0056 237 ProSitePatterns GATA-type zinc finger domain. 127 152 IPR000679 GO:0006355|GO:0043565
Vra7g0056 237 SMART GATA_3 121 176 IPR000679 GO:0006355|GO:0043565
Vra7g0056 237 Pfam GATA zinc finger 127 161 IPR000679 GO:0006355|GO:0043565
Vra7g0056 237 ProSiteProfiles GATA-type zinc finger domain profile. 121 157 IPR000679 GO:0006355|GO:0043565
Vra7g0056 237 MobiDBLite consensus disorder prediction 163 191 - -
Vra7g0056 237 PANTHER GATA TRANSCRIPTION FACTOR 18 1 236 IPR044272 GO:0003700|GO:0009908
Vra7g0056 237 CDD ZnF_GATA 126 158 IPR000679 GO:0006355|GO:0043565
Vra7g0056 237 MobiDBLite consensus disorder prediction 169 191 - -
Vra7g0056 237 PANTHER GATA TRANSCRIPTION FACTOR 18 1 236 - -
Vra7g0056 237 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 124 163 - -
Vra7g0056 237 Gene3D - 123 185 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0056 Vra-Chr7 1256842 1259150 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0056 5 237 C2C2-Gata Transcription Factor Family AT3G50870 40.909 1.15e-53 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vra7g0056 GATA 6.6e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0056 - - gsj:114390318 299.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0691 11 5578238 5580210 Vra7g0056 7 1256842 1259150 PCT
Vra7g0056 7 1256842 1259150 Vra11g0825 11 6843851 6853799 PCT