Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0047 ATGTCTTCCCCTAATAAGAAATCTGAACCCCATAACAACACACCCGATGACGCCACCCCCGACGACTCCACCCCCGACAACGCCACTCCCGATGACTCCACACCGGACAATGCCACGCCCGACAATGCCACACCCGACAATGCCACGCCCGATAAATCAAATGGATCACATAAATCGTCGTCCACTCATTCACCACCGAGCAAAGATTCACATAAATCGCTGTCGCATGAAAAGCTGGCAGCGTCAAACAACGAGGATGGCACGAATAAAGCAGCATTGGGAGCGGGGATCGGAGTTGGGTTTGTGATTCTGGTGTTGGTCGTTGTGTGTTTGGTTTGGTGTTGCAGGAGGAAGAAGCGAAAGCAGAATAAAAACTACTATTACGCATCTCCTTCTAAAGGAAAAGCAGCTAACAATTATTACAACACTGGACAACAATCTCTTCCTCATTGGCAAGCAGGAGCTGGTCCTCATATGGGGGAGCATGTTGTGAGGGTTCAACAACAGCAACAACAACAGGGGATGGGGATGGGGATGGGGATGGGGATGCAGATGGGGATGCAGATGGGAATGGGAATGGGTCCTCCTAGTGGTGGCTGGGGAACATCACATCCTCAAATGAGCAGTGGTGATATGAGCTCTAATTATTCAGCGGGTATGGGTTCCACATCGCCAGGCCTTTCTCTGACGCTGAAAAGTGGTACCTTCACTTATGAGGAGCTAGCAGCTGCCACCAAAGGATTTGCCAATGACCAGATTATTGGACAAGGTGGCTTTGGTTATGTCCATAAGGGAGTTTTGCCTAATGGAAAGGAAGTGGCTGTTAAGAGTCTAAAAGCAGGTAGTGGACAAGGAGAACGCGAATTCCAAGCTGAGATTGAAATCATCAGTCGAGTTCATCATCGTCATCTTGTGTCACTTGTTGGATATTGCATTTGTGGAGGCCAAAGAATGCTCGTCTATGAATTTGTTCCCAACTCAACTTTGGAACATCACCTTCATGGTAAAGGTATGCCTACCATGGATTGGCCTACTAGAATGCGAATTGCTATTGGATCTGCCAAAGGGCTTGCCTACCTTCACGAAGATTGTAGCCCTCGAATTATCCATCGCGACATTAAAGCTTCTAATGTCCTTCTTGATCTAAGCTTTGAAGCCAAGGTGTCTGATTTTGGACTTGCAAAGTTGACCAATGATACCAATACACATGTCTCAACTCGTGTCATGGGAACATTCGGGTACTTGGCCCCAGAATACGCATCAAGTGGAAAATTGACAGAGAAGTCCGATGTTTTCTCATTTGGGGTGATGCTTTTGGAACTCATAACAGGGAAACGACCTGTAGATCCAACGAATGCCATGGAAGACAGTTTAGTGGATTGGGCTCGACCACTCCTGAATAAAGGATTGGAGGATGGGAACTTTGGAATGTTGGTGGATCCATTTTTGGAAGGTAACTACAATGCCCAGGAAATGACAAGAATGGCAGCTTGTGCAGCTGCAAGCATCCGTCATTCTGCTAAGAAGCGTTCAAAAATGAGTCAGATTGTGAGAGCACTGGAAGGAGATGTCTCATTGGAAGACTTAAAAGATGGAATGAAACTTACAACAGGGAATGGGAATAGTGGTGCCTACCCTTCTTCGTCTGGAAGCTCAGAATATGATACCATGCAATACAATGCTGATATGGCAAAGTTCAGACAGGCAATAATGTCCAGCCAAGAATTTAATGACAGTGGTGACCTTTCCAGTAAGGAGATCGGTTATCATTAG 1773 0.4642 MSSPNKKSEPHNNTPDDATPDDSTPDNATPDDSTPDNATPDNATPDNATPDKSNGSHKSSSTHSPPSKDSHKSLSHEKLAASNNEDGTNKAALGAGIGVGFVILVLVVVCLVWCCRRKKRKQNKNYYYASPSKGKAANNYYNTGQQSLPHWQAGAGPHMGEHVVRVQQQQQQQGMGMGMGMGMQMGMQMGMGMGPPSGGWGTSHPQMSSGDMSSNYSAGMGSTSPGLSLTLKSGTFTYEELAAATKGFANDQIIGQGGFGYVHKGVLPNGKEVAVKSLKAGSGQGEREFQAEIEIISRVHHRHLVSLVGYCICGGQRMLVYEFVPNSTLEHHLHGKGMPTMDWPTRMRIAIGSAKGLAYLHEDCSPRIIHRDIKASNVLLDLSFEAKVSDFGLAKLTNDTNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELITGKRPVDPTNAMEDSLVDWARPLLNKGLEDGNFGMLVDPFLEGNYNAQEMTRMAACAAASIRHSAKKRSKMSQIVRALEGDVSLEDLKDGMKLTTGNGNSGAYPSSSGSSEYDTMQYNADMAKFRQAIMSSQEFNDSGDLSSKEIGYH* 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0047 590 Gene3D Phosphorylase Kinase; domain 1 219 323 - -
Vra7g0047 590 MobiDBLite consensus disorder prediction 17 68 - -
Vra7g0047 590 MobiDBLite consensus disorder prediction 1 87 - -
Vra7g0047 590 Gene3D Transferase(Phosphotransferase) domain 1 324 534 - -
Vra7g0047 590 PANTHER RECEPTOR-LIKE KINASE 8 589 - -
Vra7g0047 590 SUPERFAMILY Protein kinase-like (PK-like) 227 520 IPR011009 -
Vra7g0047 590 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 8 589 - -
Vra7g0047 590 ProSiteProfiles Protein kinase domain profile. 248 508 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g0047 590 Pfam Protein tyrosine and serine/threonine kinase 251 451 IPR001245 GO:0004672|GO:0006468
Vra7g0047 590 ProSitePatterns Protein kinases ATP-binding region signature. 254 276 IPR017441 GO:0005524
Vra7g0047 590 SMART serkin_6 248 483 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g0047 590 ProSitePatterns Serine/Threonine protein kinases active-site signature. 368 380 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0047 Vra-Chr7 1124115 1127382 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0047 46 580 Trihelix Transcription Factor Family AT1G70460 46.972 5.85e-147 439
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Vra7g0047 PK_Tyr_Ser-Thr 2.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0047 - - gmx:100805872 810.061
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0679 11 5445467 5454062 Vra7g0047 7 1124115 1127382 PCT