Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0043 ATGACGGTTGATTTGGACAACGTTTCCACAGTGTCAGGGGAAGCAAGCATGTCTTCCTCTGGCAATCAAAAAAAACCTGCTCCCAAGAGAAAACGAAACCTCCCTGGCATGCCAGATCCTGAGGCAGAGGTGATTGCTCTGTCGCCGAAGACGCTGTTGGCGACCAACAGGTTCGTCTGCGAGATATGCAACAAAGGGTTTCAGAGGGACCAGAATCTGCAGCTTCATCGGAGAGGTCACAACTTGCCCTGGAAGCTGAGGCAGAGGTCCACCAAGGAGGTAAGGAAGAGAGTGTACGTGTGTCCCGAACCTGCGTGCGTGCACCACGACCCTTCTAGAGCCTTGGGGGACTTGACGGGGATTAAGAAGCACTTCTGCAGGAAGCACGGTGAGAAGAAGTGGAAATGCGACAAATGCTCCAAGAAATACGCCGTTCAGTCGGATTGGAAAGCGCACTCCAAAGTATGCGGCAATAGAGAGTATAAGTGCGATTGTGGAACCGTTTTCTCCAGGAGGGATAGCTTCATTACGCATAGAGCGTTTTGCGATGCGTTGGCCAAGGAGGGTGCGAGATCTCACACTGTTGTTACCAAGGCTAATGAGGAGAATGATTCAATGGTTTTAACCGACTCACCGCCGCCGGAGGTTGCGGCGGCTGCAGCCACCACCCCTGCGCAATCTAACAGTGTCATATCTTCTGGTGTGCAGAAACAGAACCCAGAGTTACCGGAAAGCAATCCCCCACAAGTCATTGAGGAGCCTCAAGCTACTACTGCTATAAGTGGGAGCTCTGGCAGCAACAATAACAGTAGTACCAATTGCTCATCAAGCAATGTTGGTGCTACTAATAATAGTAATAGTAGTAGTGTGTTTGCAAGTTTGTTTGCTTCTTCAACGTCATCTGGGACTCTTCAATCTCAAACACCAGCATTCTGTAACTTAGTTAGAGCCATGGGGCCTCCAGATCACCGTGCAGATATCACATCTCCCTCTTCATCTGAGGCCATATCTCTTTGCCTCTCCACCAGTAATGCCTCATCAATATTCGCAACAGGAGCCTCGCTTCCGCAACCGGCCATGTCAGCCACTGCATTGCTGCAGAAAGCTGCTCAAATGGGTGCTGCAGCCACAAATGCCTCTCTGCTTCGCGGGTTTGGCATTGTGTCATCATCTTCAGCTTCAACCCCATCAGGGCAGCAAAATGGCCTGCAATGGGGTCAGCCTCAGTTAGAATCTGAGAGTGTTTCGGTTCCTGCAGGGCTTGGACTTAGTCTTCCATGTGATGGTGATTCTGGACTGAAGGAATTGATGACGGGGACACCCTCCATGTTTGGTCCTAAACACACAACTCTTGATTTTCTAGGATTGGGGATGGCTGCTGGTGGAGGCTTATCTGCACTCATCACATCTATTGGTGGTGGTTTGGATGTTGCTGCTGCAGCTGCAGCAGGAACCTTTGGTAATGGGGAGTTTTCTGGCAAAGATATTGGAAGGAGGAGCTCTTGA 1506 0.5033 MTVDLDNVSTVSGEASMSSSGNQKKPAPKRKRNLPGMPDPEAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSTKEVRKRVYVCPEPACVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKVCGNREYKCDCGTVFSRRDSFITHRAFCDALAKEGARSHTVVTKANEENDSMVLTDSPPPEVAAAAATTPAQSNSVISSGVQKQNPELPESNPPQVIEEPQATTAISGSSGSNNNSSTNCSSSNVGATNNSNSSSVFASLFASSTSSGTLQSQTPAFCNLVRAMGPPDHRADITSPSSSEAISLCLSTSNASSIFATGASLPQPAMSATALLQKAAQMGAAATNASLLRGFGIVSSSSASTPSGQQNGLQWGQPQLESESVSVPAGLGLSLPCDGDSGLKELMTGTPSMFGPKHTTLDFLGLGMAAGGGLSALITSIGGGLDVAAAAAAGTFGNGEFSGKDIGRRSS* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0043 501 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Vra7g0043 501 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 80 IPR013087 -
Vra7g0043 501 SUPERFAMILY beta-beta-alpha zinc fingers 57 154 IPR036236 -
Vra7g0043 501 SMART c2h2final6 134 154 IPR013087 -
Vra7g0043 501 SMART c2h2final6 99 129 IPR013087 -
Vra7g0043 501 SMART c2h2final6 58 80 IPR013087 -
Vra7g0043 501 MobiDBLite consensus disorder prediction 1 24 - -
Vra7g0043 501 Gene3D Classic Zinc Finger 38 104 - -
Vra7g0043 501 MobiDBLite consensus disorder prediction 1 41 - -
Vra7g0043 501 Gene3D Classic Zinc Finger 112 191 - -
Vra7g0043 501 Pfam Zinc finger, C2H2 type 58 80 IPR013087 -
Vra7g0043 501 MobiDBLite consensus disorder prediction 201 282 - -
Vra7g0043 501 PANTHER ZINC FINGER PROTEIN GAI-ASSOCIATED FACTOR 1 1 500 - -
Vra7g0043 501 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 500 - -
Vra7g0043 501 MobiDBLite consensus disorder prediction 221 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0043 Vra-Chr7 1074731 1078356 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0043 1 500 IDZ Gene Family AT5G66730 55.515 1.27e-177 506
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra7g0043 zf-C2H2 0.0051 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0043 K25869 - gmx:100783947 714.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0667 11 5336764 5340378 Vra7g0043 7 1074731 1078356 PCT