Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0037 ATGAATAATCGACTTGAAGGCCAAATGATGCTCTTCTCTCACCAATATCCTGGTGCATTATTCACTGAAGTAACTCCTCCTCAACAAGGAAAAGAAGCCAAGCCAAGACGCAAGAGAAACAAAAATGGTGCTGCGGCCACCCCCAAGAAGAGAAAGCTCACTGCCGAGCAAGTTAGTCTTCTCGAGAAAAATTTCTGCAGTGAACAGAAACTTGAATCTGAAAGGAAGGACCAAATCGCATTTGAGCTTGGTATGGACCCTCGACAAGTTGCAGTATGGTTTCAAAATCGACGATTTCGTTGGAAAACCAAAAAGTTGGAGGAAGAGTACTCCAATCTTAAGAATGTTCATGAAACCACCATGCTTCAGAAGTGCCACCTTGAGACTCGGGTATTGAAACTGGAGGAGCAGCTTTTGGAAGCAAAGAAGGAGATTCAGCAGTTACAAGAGCGTGATGAAAGAGCCTCAAGCAAACATTTACTGGAAGCTGTGAACCCACCATTTCCTGAAGAGTTTAGGGTGGAAGAATATGATTATGGTGATGTTTTCTACATTCCAGAAACTCATTACATCAATGGAATGGAGTGGATTAATCTCTACATGTGA 606 0.4257 MNNRLEGQMMLFSHQYPGALFTEVTPPQQGKEAKPRRKRNKNGAAATPKKRKLTAEQVSLLEKNFCSEQKLESERKDQIAFELGMDPRQVAVWFQNRRFRWKTKKLEEEYSNLKNVHETTMLQKCHLETRVLKLEEQLLEAKKEIQQLQERDERASSKHLLEAVNPPFPEEFRVEEYDYGDVFYIPETHYINGMEWINLYM* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0037 201 SMART HOX_1 47 108 IPR001356 GO:0003677
Vra7g0037 201 Coils Coil 131 158 - -
Vra7g0037 201 ProSiteProfiles 'Homeobox' domain profile. 44 104 IPR001356 GO:0003677
Vra7g0037 201 MobiDBLite consensus disorder prediction 21 51 - -
Vra7g0037 201 ProSitePatterns 'Homeobox' domain signature. 79 102 IPR017970 GO:0000981|GO:0006355
Vra7g0037 201 CDD homeodomain 49 105 IPR001356 GO:0003677
Vra7g0037 201 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-40-LIKE 6 200 - -
Vra7g0037 201 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 6 200 IPR045224 GO:0003700
Vra7g0037 201 SUPERFAMILY Homeodomain-like 49 112 IPR009057 -
Vra7g0037 201 Gene3D - 40 112 - -
Vra7g0037 201 Pfam Homeodomain 49 102 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0037 Vra-Chr7 979407 981027 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0037 1 201 Homeobox Transcription Factor Family AT4G36740 47.465 3.58e-57 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Vra7g0037 Homeodomain 2.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0037 K09338 - gmx:100803948 266.929
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0659 11 5284314 5286302 Vra7g0037 7 979407 981027 PCT