Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0034 ATGGTAGACTTTCCCCTCCAAAACATCCTCTTTCGTAACTCAGATTCTGAATCCTCTATGGTGAGGCTTATCATCGTAAAGGTAGCTTCTGGATGTGACATCATTGAATCCATTCTTGATGTTGGTCGGAAAAATCACACCAGTCTCACTATTCAAAGTGCCTCTGGTACCATTGCCTCGGTAACCCTTGGTGACAACCCTGATGTAAGGTTTTATGGGCCATTCAACATAGTTTCTCTTACTGGCTCCTACTTATATCACAACCAAGACACCCCTCTCTTGGAACTCATCCCTCCGCCTTCCTTTTCCTTTGGGCTCATTCTCTCCACCCGTCATGGTTCTGCATTTGGTGGTAATGTCGGTGGTCGACTCATCGCACATAATGATGTCAACTTGACCATCTTCACCTTCAATAATGAGTCTTAG 426 0.4484 MVDFPLQNILFRNSDSESSMVRLIIVKVASGCDIIESILDVGRKNHTSLTIQSASGTIASVTLGDNPDVRFYGPFNIVSLTGSYLYHNQDTPLLELIPPPSFSFGLILSTRHGSAFGGNVGGRLIAHNDVNLTIFTFNNES* 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0034 141 Gene3D - 21 141 - -
Vra7g0034 141 SUPERFAMILY AF0104/ALDC/Ptd012-like 19 139 - -
Vra7g0034 141 Pfam Plants and Prokaryotes Conserved (PCC) domain 23 139 IPR005175 -
Vra7g0034 141 ProSiteProfiles PPC domain profile profile. 17 141 IPR005175 -
Vra7g0034 141 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 15 140 IPR014476 GO:0003680
Vra7g0034 141 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 140 - -
Vra7g0034 141 CDD DUF296 22 127 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0034 Vra-Chr7 929773 930198 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0034 10 141 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 30.935 1.96e-10 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0034 - - vra:106765908 282.337