Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0020 ATGGGTTTGACAGAGGAGAAGATGGTGTTCTCTTTTGAGTCTCAGAAATCAGTGGCAGCACCTTTCCTCACAAAGACATATCAACTTGTTGATGATCCTCTCACAGACCACATTGTTTCATGGGGTCAAGATCAAACCACTTTTGTTGTCTGGAGACCTCCTGACTTTTCCAGAGATCTTCTTCCCAACTACTTCAAACACAACAACTTCTCAAGCTTTGTTAGGCAACTCAACACCTATGGTTTCAAGAAGGTAGTTTCTGATAGGTGGGAGTTTGCCAATGAGTACTTCAAAAAAGGAGCTAAGCACCTTTTGTGTGAAATACAGAGGAGAAAATCACCTCAGCAACATCATGAACAAGATCAAACTCTCTGCTGGCTTCATACTCCTCTTTCATCTCCAAAACCAAGCACAGACATTCTAACATCCCTTTCTGAAGACAACCAAAGACTAAGGAAAAACAACTTCATGCTCTTGTCAGAACTTAGTCACATGAAGAGTTTGTACAATGACATCATATATTTCATCCAAAACCATGTTAAACCTCCACCACCCTTTGAACAAAGAACCAGCACTTCCGTTCCAAAGCTGGTGGACAAGTCCTTGTTCACTTCTTCTGAAGAATCAAACAGTTCTGTTAAGCTCTTTGGGGTCCTTCTAAGTGGCACAAAGAGATTGAACCCAGATAACATTAATTGA 699 0.4092 MGLTEEKMVFSFESQKSVAAPFLTKTYQLVDDPLTDHIVSWGQDQTTFVVWRPPDFSRDLLPNYFKHNNFSSFVRQLNTYGFKKVVSDRWEFANEYFKKGAKHLLCEIQRRKSPQQHHEQDQTLCWLHTPLSSPKPSTDILTSLSEDNQRLRKNNFMLLSELSHMKSLYNDIIYFIQNHVKPPPPFEQRTSTSVPKLVDKSLFTSSEESNSSVKLFGVLLSGTKRLNPDNIN* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0020 232 SUPERFAMILY "Winged helix" DNA-binding domain 20 111 IPR036390 -
Vra7g0020 232 PRINTS Heat shock factor (HSF) domain signature 22 45 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra7g0020 232 PRINTS Heat shock factor (HSF) domain signature 60 72 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra7g0020 232 PRINTS Heat shock factor (HSF) domain signature 73 85 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra7g0020 232 SMART hsfneu3 18 111 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra7g0020 232 ProSitePatterns HSF-type DNA-binding domain signature. 61 85 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra7g0020 232 Pfam HSF-type DNA-binding 22 111 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra7g0020 232 Gene3D - 14 112 IPR036388 -
Vra7g0020 232 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 6 225 IPR027725 -
Vra7g0020 232 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-4B 6 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0020 Vra-Chr7 554216 555324 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0020 6 185 HSF AT1G46264 57.466 9.66e-82 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vra7g0020 HSF_DNA-bind 2.2e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0020 K09419 - gmx:100806150 376.711