Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0007 ATGATTGTGGATCCAAGGGAGGGCAAAGGCATACTGGCACCACAGCCCATGTGCCTCCCACCACCACCTTCCCCACCACCACATGTGAAACAAAACTACTATTCTGGGGAGATTGGGCATGATGGTCAGGGTTATGTTATGGTTGGCAGCATGATAACCGTGATGGCTTTGGGATTTCCTGTTGATGCTCGTCTTCTTGAGGGTAATCCTCTTATGGTTGATCAAGCAGCACTGACTGGGGAGTCACTTCTAGTTACTAAGCATCCAGGGCAAGAAGTGTTCTCTGGATCAACTTGTAAACAAGGAGAGATTGAAGCCGTTGTGATTGCCACTGGTGTGCACACCTTCTTTGGAAAGGCAGCACACTTGGTGGATAGCACCAACCAAGTTGGACATTTCCAGAAGGTTCTTACTGCAATTGGAAACTTCTGCATCTGTTCCATTGCGGTTGGTATGCTGGCTGAGATCATAGTGATGTACCCAATTCAGCACCGCAAGTACAGGGATGGAATTGACAACCTGTTGGTTCTCTTGATTGGAGGTATTCCCATTGCTATGCCTACTGTGTTGTCTGTGACAATGACCATCGGTTCTCACAAGCTCTCTCAGCAAGGTGCCATCACCAAGAGAATGACTGCCATTGAAGAAATGGCAGGCATGGATGTTCTTTGCAGTGACAAAACAAGAACACTCATCCTCAACAAACTCACTGGCACGACGGCGACCCCAGCGGCAGTCAGTGGCACCGGCGGCACCCATCTCGCGTTTCTATGGCGGCGGCTCATGACGGCGGTGATGGAGAAACAGTGGCAATCGACGTTCGAGGGTGGAAGACTCCAACCCTAG 846 0.5012 MIVDPREGKGILAPQPMCLPPPPSPPPHVKQNYYSGEIGHDGQGYVMVGSMITVMALGFPVDARLLEGNPLMVDQAALTGESLLVTKHPGQEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGMLAEIIVMYPIQHRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMTIGSHKLSQQGAITKRMTAIEEMAGMDVLCSDKTRTLILNKLTGTTATPAAVSGTGGTHLAFLWRRLMTAVMEKQWQSTFEGGRLQP* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0007 281 Pfam E1-E2 ATPase 60 203 - -
Vra7g0007 281 Gene3D - 112 220 - -
Vra7g0007 281 PANTHER CALCIUM-TRANSPORTING ATPASE 50 238 - -
Vra7g0007 281 PANTHER PLASMA MEMBRANE ATPASE 50 238 - -
Vra7g0007 281 MobiDBLite consensus disorder prediction 1 25 - -
Vra7g0007 281 PRINTS P-type cation-transporting ATPase superfamily signature 74 88 - -
Vra7g0007 281 PRINTS P-type cation-transporting ATPase superfamily signature 224 238 - -
Vra7g0007 281 Gene3D - 221 235 IPR023214 -
Vra7g0007 281 SUPERFAMILY Calcium ATPase, transduction domain A 48 124 IPR008250 -
Vra7g0007 281 SUPERFAMILY Calcium ATPase, transmembrane domain M 124 219 IPR023298 -
Vra7g0007 281 Gene3D - 60 111 - -
Vra7g0007 281 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 46 239 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0007 Vra-Chr7 146109 147464 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0007 43 237 Primary Pumps ATPases AT2G18960 84.264 4.53e-110 336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0007 K01535 - vra:106765894 541.962