Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0003 ATGGAACCCAGATTGGGGTTTCTGCTGCTTCCCCTTGTGCTGTTTTCTCTTGTGTTGGCAGCAGAATCGGCGTGCAAGCAGGGTTGCCCTCTGGCTCTGGGCTCCTACTACATGTGGTCCGGCTCCAACCTCACCTACATCTCCGAGGTCATGTCCTCATCCCTTCTCACCACTCCCGACGACATAGTCCTCTACAACAAGGACACCATCCCCAACAAGGACAGCGTCCAGGCCTTCATAAGGGTCAACGTCCCCTTCCCTTGCGACTGCATCGACGGCCAGTTTCTCGCTCACACCTTCCAGTACGATGTTCAAACGCAGGACACCTACGAGCAAGTCGCCAGGGTCGTCTTCTCTAACCTCACCGATGTTACCTGGCTCAGGAGGTTCAACACCTATGAACCCGATAACATTCCCGACACGGGCACTCTCAACGTCACGGTGAATTGCTCTTGTGGGAACACCGATGTTGCCGATTATGGGCTGTTCATCACGTACCCTCTCAGAACCGGGGAGACTCTCGGCTCGGTGGCTTCTGATGTGAGCCTTGACTCGGGGTTGCTGCAGAGGTACAACCCTGACGTCAATTTCAACCAGGGGAGTGGACTCGTTTATATTCCGGGAAAAGATCAAAATGGTAGCTATGTGTTTTTGCCGTCCAGTTCAGGAGCAGGACTTGCTGGTGGGGCTATTGCTGGAATAGCTGTTGGAGTTGTGGCAGTTCTTCTGGTATTAGGAGTTGTTATATATTTCAGAATATTCCGGAAGAAGATAAAGAAGGAGGAACTTTCACGAGATTCTAGTGCACTCTTTGCTCAAGATGGGAAGGATGAAGCTTCCCGTAGTAGTGCGCATGAAACTTTAGGACCTGGTGGTCCTACCGCTATCACCGGCATAAAAGTGGACAAATCGGTGGAATTCACATATGAGGAACTAGCAACTGCCACAGATAACTTTAGTTTGGCTAATAAAATTGGTCAAGGAGGTTTTGGGTCAGTCTATTATGCGGAGCTGAGGGGAGAGAAAGCTGCAATCAAGAAGATGGATATGCAAGCATCAAAAGAATTTCTTGCTGAATTGAAAGTCTTGACACGTGTTCATCATTTAAACCTGGTGCGGCTGATTGGGTATAGCATCGAGGGATCTCTTTTTCTTGTCTATGAATACATTGAAAATGGAAACCTAAGCCAACATCTGCGTGGTTCAGGTAGTAGAGAACCACTGCCATGGGCTACTCGTGTTCAGATTGCTTTGGATTCTGCCAGAGGTCTTGAATATATTCACGAGCACACAGTACCTGTATATATTCATCGTGACATCAAGTCAGCAAATATATTAATAGACAAAAACTTTCGGGGCAAGGTTGCTGATTTTGGATTAACCAAACTTACAGAAGTTGGAAGTTCATCACTTCCCACGGGTCGTCTTGTTGGAACATTTGGATACATGCCACCGGAGTATGCTCAATATGGGGATGTTTCTCCCAAAGTAGACGTGTATGCTTTTGGAGTTGTTCTTTATGAACTCATTTCGGCTAAGGAAGCAATTGTCAAGACAAACGACTCTGCTACCGACTCAAAGGGCCTAGTAGCTTTGTTTGATGGAGTTCTTGGTCAGCCGGATAACACTGAAGATCTCATCAAACTAGTTGATCCAAGGCTTGGGGATAACTACCCAGTTGACTCTGTCCGCAAGATGGCACAACTAGCCAAAGCCTGTACACAAGACAATCCTCAACTCCGTCCAAGTATGAGATCTATTGTGGTTGCGCTAATGACACTTTCTTCAACTACAGACGAGTGGGATGTTGGTTCCTTCTATGAAAATCAAAATCTTGTGAATCTAATGTCAGGAAGATAG 1860 0.4699 MEPRLGFLLLPLVLFSLVLAAESACKQGCPLALGSYYMWSGSNLTYISEVMSSSLLTTPDDIVLYNKDTIPNKDSVQAFIRVNVPFPCDCIDGQFLAHTFQYDVQTQDTYEQVARVVFSNLTDVTWLRRFNTYEPDNIPDTGTLNVTVNCSCGNTDVADYGLFITYPLRTGETLGSVASDVSLDSGLLQRYNPDVNFNQGSGLVYIPGKDQNGSYVFLPSSSGAGLAGGAIAGIAVGVVAVLLVLGVVIYFRIFRKKIKKEELSRDSSALFAQDGKDEASRSSAHETLGPGGPTAITGIKVDKSVEFTYEELATATDNFSLANKIGQGGFGSVYYAELRGEKAAIKKMDMQASKEFLAELKVLTRVHHLNLVRLIGYSIEGSLFLVYEYIENGNLSQHLRGSGSREPLPWATRVQIALDSARGLEYIHEHTVPVYIHRDIKSANILIDKNFRGKVADFGLTKLTEVGSSSLPTGRLVGTFGYMPPEYAQYGDVSPKVDVYAFGVVLYELISAKEAIVKTNDSATDSKGLVALFDGVLGQPDNTEDLIKLVDPRLGDNYPVDSVRKMAQLAKACTQDNPQLRPSMRSIVVALMTLSSTTDEWDVGSFYENQNLVNLMSGR* 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0003 619 Pfam Protein tyrosine and serine/threonine kinase 321 590 IPR001245 GO:0004672|GO:0006468
Vra7g0003 619 ProSitePatterns Serine/Threonine protein kinases active-site signature. 435 447 IPR008271 GO:0004672|GO:0006468
Vra7g0003 619 CDD STKc_IRAK 325 588 - -
Vra7g0003 619 SMART serkin_6 319 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g0003 619 ProSitePatterns Protein kinases ATP-binding region signature. 325 347 IPR017441 GO:0005524
Vra7g0003 619 MobiDBLite consensus disorder prediction 275 295 - -
Vra7g0003 619 SUPERFAMILY Protein kinase-like (PK-like) 301 591 IPR011009 -
Vra7g0003 619 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 9 619 IPR044812 GO:0019199|GO:0045087
Vra7g0003 619 Gene3D Transferase(Phosphotransferase) domain 1 390 611 - -
Vra7g0003 619 Gene3D Phosphorylase Kinase; domain 1 304 389 - -
Vra7g0003 619 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1 9 619 - -
Vra7g0003 619 ProSiteProfiles Protein kinase domain profile. 319 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0003 Vra-Chr7 57878 68107 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0003 1 619 Receptor kinase-like Gene Family AT3G21630 58.147 0.0 705
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vra7g0003 PK_Tyr_Ser-Thr 1.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0003 - K13429 gmx:100777781 1024.62