LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra7g0001	ATGGCTTCTTTGATCCGTCTGATATTGTTCTCAATGCTTATGTTCTACTTACTCGGCACCCTTAACATTTTAGCAACTGAAACAGCCTCAACTTTCAGGCACTATGATTGCAAATTCTTGCCAAAGTTTCGTCCCAAAAGTAGTTACCAATTGAATCTGAATAAACTCTTATCTAAACTTACATCCAAAGTTAACACCACCAACTATTACAACACCACAGTCAGTGGAACAAACAAACAAGACACTGTCTATGGCCTCTTCATGTGCAATGGATATACGGAGAAATGTGGAGAATGTGTGAATACTTCAATCCAGACACTTAAATCAAAGTGTGTCTTCAACAAAGAGGCTATAATTTGGACTCATGAATGCATGGTTCGCTACTCAGACAGGTTTTTCTACAACACTACTGAGAAACGGCCATCATGGTGTGTTAAGAACAGTGAGGATTATGAGGGGGAATTGGATATTTTCAACAGAATGCTGAGTTCCTTGATGGAGGATCTTCTGAATGAAGCCAGTGAAGCTCAAATGGGTTCTGTTAAATTTGCTGTGAAGAAAATAACATTCTCTCAGGACAAGCACTTTTTTGGCTTCGCTCAGTGCATGCCATACCTCTCCAAGGAAAATTGCAGAAAGTGCCTTAGGGATGCCATGAATTTTCTTCAAACATGTGCAAAAGGCAAGATAGGAGGAAGAGTTATATATCCCAGCTGTATTGTTAGATATGATCATTATCTGTTTTTCCCACTTCTTAGAGGAAAAAGAAAGAATCTGAGAGTAATTGCATCAATCATATTTTTTCATGGCGTTGTTCCAGTTATTGTTTTGCTTTTTGTTTGCTATTTGTTACATAGGGAGTTAAGGAAGGATCTCAAGCACCGAAAAGGAAATTTAACTGACTACATTTTTGGTTTAGGTGGGGAAGAGATTTCAACAGGATTGAACTCTCTGCAATTTGAATTGAGTACTATTCAAGAAGCAACAAACAAGTTTTCTGATGATAACAAGATAGGGGAAGGTGGTTTTGGAGCAGTATACAAGGGTGTATTTTCAAATGGACTTGAAATAGCAGTAAAGAGGCTAAAGAAAAATTCCAGTCAAGGAGCTATAGAATTCAAGAAAGAGGTTTTGCTAATTTCCAAACTTCAACATAGAAATCTTGTGAGACTGATAGGATTTTGCATGCAAAGGAATGAGAAGATACTCATTTATGAGTTTGTGCACAACAAAAGCCTTGATTACTACCTATTCAGCCCTCAAAATCATAGGAAATTAAGTTGGTCCGAACGTTACGAGATTATAAGAGGAATTGCACGAGGAATTCTCTATCTTCACGAGGATTCTCATCTTAACATTATACACTGTGATCTTAAACCTAGTAACATTTTGCTAGACAACAAAATGAACGCAAAAATATCAGATTTTGGATTAGCAAGGATTATTTCCATTGATCAAATGCAAGGGATCACAAGTATAATTTCTGGAACATATGGCTACATGTCTCCTGAATATGCAATGCTTGGCCAATTTTCTATGAAATCTGATGTTTTTAGTTTTGGAGTTATAATTCTTGAAATAATCAGTGGGAAGAGAAACGTTGATGGGAATGGAAAAGATTTGGATGATCTCTTGAGCCATGCTTGGAAGAAGTGGAAGAAAAACAAAGTACTTGAATTGTTGGATCCCTCATTACGACACTCCTTCTCTGAAACAGAAATCAAAAAGTGTGTACAAATTGGTCTATTATGTGTTCAGGGAAACCCAGATCAGAGGCCTATCATGGCAAAAATTGCTTTGTATTTTAGCTGTGATCAAGTTGGAAAACTGCCTTTACCTCAAGAACCAGCATTTCTTATGCGTGGAAAAACAGAAACCAAGGATTTCTAA	1890	0.3704	MASLIRLILFSMLMFYLLGTLNILATETASTFRHYDCKFLPKFRPKSSYQLNLNKLLSKLTSKVNTTNYYNTTVSGTNKQDTVYGLFMCNGYTEKCGECVNTSIQTLKSKCVFNKEAIIWTHECMVRYSDRFFYNTTEKRPSWCVKNSEDYEGELDIFNRMLSSLMEDLLNEASEAQMGSVKFAVKKITFSQDKHFFGFAQCMPYLSKENCRKCLRDAMNFLQTCAKGKIGGRVIYPSCIVRYDHYLFFPLLRGKRKNLRVIASIIFFHGVVPVIVLLFVCYLLHRELRKDLKHRKGNLTDYIFGLGGEEISTGLNSLQFELSTIQEATNKFSDDNKIGEGGFGAVYKGVFSNGLEIAVKRLKKNSSQGAIEFKKEVLLISKLQHRNLVRLIGFCMQRNEKILIYEFVHNKSLDYYLFSPQNHRKLSWSERYEIIRGIARGILYLHEDSHLNIIHCDLKPSNILLDNKMNAKISDFGLARIISIDQMQGITSIISGTYGYMSPEYAMLGQFSMKSDVFSFGVIILEIISGKRNVDGNGKDLDDLLSHAWKKWKKNKVLELLDPSLRHSFSETEIKKCVQIGLLCVQGNPDQRPIMAKIALYFSCDQVGKLPLPQEPAFLMRGKTETKDF*	630

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra7g0001	629	SUPERFAMILY	Protein kinase-like (PK-like)	318	607	IPR011009	-
	Vra7g0001	629	Gene3D	Phosphorylase Kinase; domain 1	309	407	-	-
	Vra7g0001	629	PANTHER	CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN	42	253	-	-
	Vra7g0001	629	PANTHER	CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN	256	622	-	-
	Vra7g0001	629	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	256	622	-	-
	Vra7g0001	629	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	42	253	-	-
	Vra7g0001	629	Gene3D	Transferase(Phosphotransferase) domain 1	408	606	-	-
	Vra7g0001	629	Pfam	Salt stress response/antifungal	42	130	IPR002902	-
	Vra7g0001	629	Pfam	Salt stress response/antifungal	149	246	IPR002902	-
	Vra7g0001	629	ProSiteProfiles	Gnk2-homologous domain profile.	139	248	IPR002902	-
	Vra7g0001	629	SMART	serkin_6	332	578	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vra7g0001	629	Pfam	Protein tyrosine and serine/threonine kinase	335	599	IPR001245	GO:0004672\|GO:0006468
	Vra7g0001	629	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	453	465	IPR008271	GO:0004672\|GO:0006468
	Vra7g0001	629	ProSiteProfiles	Gnk2-homologous domain profile.	31	133	IPR002902	-
	Vra7g0001	629	ProSiteProfiles	Protein kinase domain profile.	332	602	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vra7g0001	629	ProSitePatterns	Protein kinases ATP-binding region signature.	338	360	IPR017441	GO:0005524
	Vra7g0001	629	CDD	STKc_IRAK	338	599	-	-
	Vra7g0001	629	Gene3D	-	142	248	IPR038408	-
	Vra7g0001	629	Gene3D	-	30	133	IPR038408	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra7g0001	Vra-Chr7	34929	37722	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra7g0001	9	628	Receptor kinase-like Gene Family	AT4G05200	41.692	2.08e-168	495

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Vra7g0001		PK_Tyr_Ser-Thr	4.7e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra7g0001	-		-	mtr:MTR_3g079850	791.186