Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g2084 ATGTCAAAATCTATGGAACTTCCAGATTGTGTATATCCTAGGCCACCAGTTACCATATTCCCATGTGCTCCAACACCAAAGCATTCTCTCCATCTATCCAATCTCGACAGCCAAAAGTTCTTCAGATTCTCCGTTAAGTACGTGCACCTCTTCGAGAAATGTGTGAGCGTGGATGTGTTGAAGTCTTCTCTGTCAAGAGCTTTGGTGGATTACTACCCCTTAGCTGGGAGATTGAGGAGGAGCAGCATTTCTGAGGATGATCACAAGCTTCAGGTGGATTGCAATGGCGAAGGTGCTGTGTTTGCTGAGGCTTTCATGGATGCCACTGCTCAACAATTACTTCAACCTTGCAACCTGCCAAACACTTCATGGAAGAAGCTCCTTTGCAAAGTCGAAGCTCAAAGTTTCTTAGATCTTCCTCCTCTTATAATCCAGGTGACAAGTCTCCGATGCGGAGGGATGATACTGTGCACGGCGATCAACCACTGTCTTTGCGACGGCACCGGCGCGTCCCAATTCCTACACGATTGGGCCCGTCTAGCTAGAGAGCCCAACACTGAATTACCAGTCACACCCTTCCACGGGCGACACGTGTTGAATCCTCGAGACCCTCCCCAGGTGCACTTCACACACGCGGGATACACCAGAGCAAACCCGGCGTCTCATGAAGTGGACCTGCACAGTTGGATGATGCACTCGCAGCCGCTGGTCGCCACGTCATTCACATTCGGAGCCTCCGAGGTGCTTCTTTTAAAGAAACAGTGTTTGTCGTGGCCGAAGCCCGTCACCACCTTCGAAAGCGTGGCGGCACACACGTGGCGTGCGTGGGTTAAATCAATGAATCTCTGCCCCACGATAACAGTTAAACTCATTTTCACAGTTAACGTTAGGAAAAAGGTTAACCTCCCAGAAGGTTATTACGGGAACGGGTTTGTTCTGGCATGCGCAGAGAGCACAGTGAGAGATTTAACAACAGTTGAAAATGATAACGACGATGATATCAGTCACGGTTTGAAAGCGTTGCAAGAAGCTAAGGCTAGTTTGGAGGAGAAAGGGTATATAAGGTCAATGGTTGATCTGTTGGAGGACAAAACGGTGCGTGTTGATCTTTCGACGAGTTTGGTTATATCGCAATGGTCAAGGCTAGGGTTGGAAGATGTGGATTTCGGATTAGGAAAACCCTTGTTTATGGGTCCTTTATCTAGCTATGTTTACTGTTTGTTTTTACCGGTGGTTGGAGATTCTGATGCAGTTAGAGTCCTCGTGTCGGTTCCTGAAAGTGTTGTGGAAAGTTTTCGTTATCACATGCTCGTGAAAGACGGTTGGAAAAAACAAGAGAATGACGATGGATTAGTATGA 1359 0.4768 MSKSMELPDCVYPRPPVTIFPCAPTPKHSLHLSNLDSQKFFRFSVKYVHLFEKCVSVDVLKSSLSRALVDYYPLAGRLRRSSISEDDHKLQVDCNGEGAVFAEAFMDATAQQLLQPCNLPNTSWKKLLCKVEAQSFLDLPPLIIQVTSLRCGGMILCTAINHCLCDGTGASQFLHDWARLAREPNTELPVTPFHGRHVLNPRDPPQVHFTHAGYTRANPASHEVDLHSWMMHSQPLVATSFTFGASEVLLLKKQCLSWPKPVTTFESVAAHTWRAWVKSMNLCPTITVKLIFTVNVRKKVNLPEGYYGNGFVLACAESTVRDLTTVENDNDDDISHGLKALQEAKASLEEKGYIRSMVDLLEDKTVRVDLSTSLVISQWSRLGLEDVDFGLGKPLFMGPLSSYVYCLFLPVVGDSDAVRVLVSVPESVVESFRYHMLVKDGWKKQENDDGLV* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g2084 452 Pfam Transferase family 18 436 - -
Vra6g2084 452 SUPERFAMILY CoA-dependent acyltransferases 15 189 - -
Vra6g2084 452 Gene3D - 14 216 IPR023213 -
Vra6g2084 452 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 13 438 - -
Vra6g2084 452 PANTHER BNAC03G58010D PROTEIN 13 438 - -
Vra6g2084 452 Gene3D - 227 437 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g2084 Vra-Chr6 37432595 37434532 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g2084 14 399 Monolignol Biosynthesis Gene Families AT5G48930 28.501 4.08e-42 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g2084 - - gmx:100797134 681.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g2084 6 37432595 37434532 Vra6g2084 6 37432595 37434532 ECH