Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g2075 ATGTATTCAAACCAAGCGTTTTCTTCAGGGNCCTATGCAGATATGTTGTCTGGGAATCCNCTTTTACCNCATAACTACAGTGAAACTGTTGGAGGACAAAATGAGTTGAAGTTCATGACATCCATGAGGGACACAATGACTGTGCANTCTATTGATGGGCATTCAAATGCGGCCCCNACAGCTGNTCAAGACTCTTTTTCCAATGCNGGAGATTCCCATTCCCATATTGTTCCAAGGACAACACAATTGGGACTTGTGGACAGTGAGCAAAATGTACAGAACCAAGGCTTGTCTCTTAGCCTTGGCTCAGTGATGCCTTCTATTGCATCAGTCCCTACCTTTCCATANCAGTATCCTGGCGCAGGNTTCTCTTCACTAATGACTGNTTCTGTNCCAAATTTAAAGGNAACTTCATCNCTCAAAGATGATGAAGCCAGCCTACAAAGGGAATTGAGAAATGCCGAGTGCATGGCATCTTTGGCTTCTTCTGGCTTTCACAAAAGGGAGGGTTTGTTGTATACTCCACAACACCCTTCAATGTGCCTCAGTGAAGGCCAAGATGGATCACTAGGCTTCTCCAGCAGTGTCTTGAGCCCACAATACCTTAAGGCAGCACAGGAGTTGCTTGATGAAATAGTTAATGTTCGAAAGGCTTTGAAGCAAACAGGTTTAGAGAAGCAACGGAGTTTCCGTGATATTGGTTTAGATGGCTCCAAAGATTCTGATGGAAAATCTACCAGCCAATCGGGGCAGATATCTTCATGTCCCAACAGTTCTGCTGCAAACTCCTCATGTGAACTCTCACCGGCAGAACGACAGAATTTGTTGGACAAAAAGACAAAACTTTTGACCATGTTGGATGAGGTTGATAAAAGATACAGACAGTACTGCCACCAGATGCAGATCGTGGTTTCATCTTTTGATATGGTTGCTGGTTGTGGAGCAGCTGAACTATACACTGCACTGGCCTTGAGTACAATATCACGCCACTTTCGATGTTTACGCGATGCCATTAGTGGTCAAATTCAAGTGACTCAAAGGAGCCTTGGAGAACAAGAGGGAATACCTCGTCTACGCTATGTTGATCAGCAGCTTCGGCAGCAAAAGGCGCTTCAGCAACTTGGTGTAATGCGACAAGCTTGGAGGCCTCAGAGGGGACTTCCTGAAACCTCTGTTTCAATACTTCGAGCATGGCTCTTTGAGCACTTCCTCCATCCTTATCCAAAGGATTCAGAGAAAATTATGCTGGCAAGGCAAACTGGCTTAACAAGAAACCAGGTGGCAAATTGGTTCATTAATGCAAGGGTGCGGCTTTGGAAGCCAATGGTTGAAGAAATCTATAAGGAAGAATTTGGCGATTCTGAGATGAGCAGCAATATATTATCATCAGAGAACACACTGAAAGCTCCAAGAGATGATGTTCAATCTCCAGACAGCAAAAGGGAAGAGTCCCAGGACAACATAATAACAGTAGATGAAAGTGATATTCAGCATCATGGGTTGAAGTTGGATCATGATTCAGAGTTGGACAGAGGAATCCGAGGTAGTGATCATGGAGAAAATGGATTGGATCCTAGAATTGGGAGACTGCAGGGTGACCAAAGGTTCAACATTAACAACAGCAACAGTTCTTATTATGGGGAAGGCTGCATAATTGCTTCTGCTCCTGCCACATACGATTTATCTGAGTTAGGTAACATTGGTGTTGGTGGACAGGTGTCACTAGCATTGGAATTGAGGAACTGTGACAGTGAAGGGTTTGGCGGGTCCAATGATGACATGCATAGAAGACGTAAGAAAACATTGGCTTCTTCCTCAGAGGCTGATTTGATAGATTACCATTTCACAGACCAAGAAAAGCAACAAAACAAGTTTGGCAATCCTCACCTATTGCACGAGTTTGTTGTGTGA 1911 0.439 MYSNQAFSSGXYADMLSGNPLLPHNYSETVGGQNELKFMTSMRDTMTVXSIDGHSNAAPTAXQDSFSNAGDSHSHIVPRTTQLGLVDSEQNVQNQGLSLSLGSVMPSIASVPTFPXQYPGAGFSSLMTXSVPNLKXTSSLKDDEASLQRELRNAECMASLASSGFHKREGLLYTPQHPSMCLSEGQDGSLGFSSSVLSPQYLKAAQELLDEIVNVRKALKQTGLEKQRSFRDIGLDGSKDSDGKSTSQSGQISSCPNSSAANSSCELSPAERQNLLDKKTKLLTMLDEVDKRYRQYCHQMQIVVSSFDMVAGCGAAELYTALALSTISRHFRCLRDAISGQIQVTQRSLGEQEGIPRLRYVDQQLRQQKALQQLGVMRQAWRPQRGLPETSVSILRAWLFEHFLHPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKPMVEEIYKEEFGDSEMSSNILSSENTLKAPRDDVQSPDSKREESQDNIITVDESDIQHHGLKLDHDSELDRGIRGSDHGENGLDPRIGRLQGDQRFNINNSNSSYYGEGCIIASAPATYDLSELGNIGVGGQVSLALELRNCDSEGFGGSNDDMHRRRKKTLASSSEADLIDYHFTDQEKQQNKFGNPHLLHEFVV* 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g2075 636 ProSiteProfiles 'Homeobox' domain profile. 378 441 IPR001356 GO:0003677
Vra6g2075 636 Coils Coil 202 222 - -
Vra6g2075 636 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 29 599 - -
Vra6g2075 636 MobiDBLite consensus disorder prediction 458 486 - -
Vra6g2075 636 CDD homeodomain 381 442 IPR001356 GO:0003677
Vra6g2075 636 MobiDBLite consensus disorder prediction 230 266 - -
Vra6g2075 636 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 29 599 - -
Vra6g2075 636 MobiDBLite consensus disorder prediction 471 486 - -
Vra6g2075 636 SMART prehox3 190 340 IPR006563 -
Vra6g2075 636 Pfam Associated with HOX 197 339 IPR006563 -
Vra6g2075 636 MobiDBLite consensus disorder prediction 508 529 - -
Vra6g2075 636 MobiDBLite consensus disorder prediction 508 524 - -
Vra6g2075 636 SUPERFAMILY Homeodomain-like 382 447 IPR009057 -
Vra6g2075 636 SMART HOX_1 381 445 IPR001356 GO:0003677
Vra6g2075 636 MobiDBLite consensus disorder prediction 50 74 - -
Vra6g2075 636 Pfam Homeobox KN domain 398 437 IPR008422 GO:0003677|GO:0006355
Vra6g2075 636 MobiDBLite consensus disorder prediction 240 266 - -
Vra6g2075 636 Gene3D - 378 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g2075 Vra-Chr6 37372240 37376867 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g2075 95 453 Homeobox Transcription Factor Family AT1G19700 53.784 4.24e-112 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vra6g2075 POX 3.3e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g2075 - - gmx:100775682 1049.65