Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g2058 ATGAACGCAATTCGTTCTCGTTGGTTTATGAGAATGGCAGAAGACCTTGGAAAGAGCAACCTCGAATCCTCTGCAGCTTCTGTTTCCACGACAACCTCGCGACGCTTTTGGCCTTCCGTCTTACGTTGGATACCCACTTCCACCGACCACATCATCAATTCCGAGAAGCGGCTTCTCTCTCTTGTCAAGACTCCATATGTTCAAGAACAGATTAATATTGGTTCTGGTCCACCTGATTCCAGAGTTAGATGGTTTCGTTCATCGAGCAATGAACCACGGTTTATTAACACCGTCACATTTGACAGTAAGGATGACTCTCCCACTTTGGTAATGGTTCATGGATATGCGGCGTCACAGGGTTTCTTTTTTCGTAATTTTGATGCACTTGCCACTCGTTTCAGAGTTATTGCTATCGATCAACTTGGTTGGGGTGGATCTAGCAGGCCTGACTTTTCATGCAGAAGCACTGAAGAAACTGAGGCGTGGTTCATTGATTCTTTTGAGGAATGGAGAAAAGCCAAAAACCTGAGCAATTTTATACTACTAGGGCATTCTTTTGGTGGTTATGTTGCTTCCAAATACGCTCTTAAGCACCCCGAACATGTAAAACACTTGATTTTGGTGGGACCTGCTGGATTTTCGTTTGAATCAGAGAGAATTACAAAGTTCTTATCTACATGGAAGGGATCAATCCTGAATCAAATATGGGAATCTAATTTTACGCCTCAGAAAATCATCAGGGGTTTAGGTCCTTGGGGTCCTGATATGGTCCGCAAGTATACCAGTGCCAGGTTTGTTACACACACAACTGGAGAAATGCTGACAGAATCTGAATCAAGATTACTGACAGATTATGTTTACCATACTTTAGCAGCAAAAGCTAGTGGCGAGCTGTGCTTAAAATATCTATTTTCATTTGGAGCACTGCCGAGGTCGCCTCTTCTTGACAGGGCATCAGAGTGGAAGGTGCCCACCACTTTCATATATGGTTTTCAGGACTGGATGAATTATGAAGGAGCTCAAAAAGCTCGCAAAGATATGAAGGTTCCCTGTGAAATAATTAGGGTTCCTCAGGCCGGGCACTTTGTGTTCATTGACAACCCAAGTAGCTTTCATTCAGCTGTGTTTTACGCTTGCCGAAGGTTTCTAAGTTCTGATCCAGACCGTGAATCCCTTCCTGAATGGCTAATCTCAGCATAG 1200 0.4375 MNAIRSRWFMRMAEDLGKSNLESSAASVSTTTSRRFWPSVLRWIPTSTDHIINSEKRLLSLVKTPYVQEQINIGSGPPDSRVRWFRSSSNEPRFINTVTFDSKDDSPTLVMVHGYAASQGFFFRNFDALATRFRVIAIDQLGWGGSSRPDFSCRSTEETEAWFIDSFEEWRKAKNLSNFILLGHSFGGYVASKYALKHPEHVKHLILVGPAGFSFESERITKFLSTWKGSILNQIWESNFTPQKIIRGLGPWGPDMVRKYTSARFVTHTTGEMLTESESRLLTDYVYHTLAAKASGELCLKYLFSFGALPRSPLLDRASEWKVPTTFIYGFQDWMNYEGAQKARKDMKVPCEIIRVPQAGHFVFIDNPSSFHSAVFYACRRFLSSDPDRESLPEWLISA* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g2058 399 SUPERFAMILY alpha/beta-Hydrolases 96 375 IPR029058 -
Vra6g2058 399 PRINTS Alpha/beta hydrolase fold signature 132 147 IPR000073 -
Vra6g2058 399 PRINTS Alpha/beta hydrolase fold signature 181 194 IPR000073 -
Vra6g2058 399 PRINTS Alpha/beta hydrolase fold signature 195 208 IPR000073 -
Vra6g2058 399 Pfam alpha/beta hydrolase fold 107 368 IPR000073 -
Vra6g2058 399 Gene3D alpha/beta hydrolase 93 380 IPR029058 -
Vra6g2058 399 PANTHER RE40534P-RELATED 19 392 - -
Vra6g2058 399 PRINTS Epoxide hydrolase signature 132 147 IPR000639 GO:0003824
Vra6g2058 399 PRINTS Epoxide hydrolase signature 181 194 IPR000639 GO:0003824
Vra6g2058 399 PRINTS Epoxide hydrolase signature 195 208 IPR000639 GO:0003824
Vra6g2058 399 PRINTS Epoxide hydrolase signature 323 339 IPR000639 GO:0003824
Vra6g2058 399 PRINTS Epoxide hydrolase signature 356 378 IPR000639 GO:0003824
Vra6g2058 399 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN-RELATED 19 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g2058 Vra-Chr6 37204742 37208652 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g2058 87 214 Acyl Lipid Metabolism Gene Families AT1G64670 32.117 5.79e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g2058 - - gmx:100789925 751.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g2058 6 37204742 37208652 Vra6g2058 6 37204742 37208652 ECH
Vra6g2058 6 37204742 37208652 Vra5g1631 5 22739413 22745445 PCT