Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g2048 ATGTCCACAAAATGCAGCCAAATCCGACACATCGTTCGGCTCCGCCAGATGTTACGGCGCTGGCGCAACAAGGCTCGCATGTCTGCAAACCGCACTCCGTCAGATGTGCCTGCAGGTCACGTGGCTGTTTGTGTAGGCACCAACCTCACCAGATTCGTGGTGCGTGCAACTTACCTGAACCACCCGGTCTTCAAGAAGCTTCTCCTTCAAGCTGAAGAAGAGTATGGCTTCTCCAACCACGGTCCATTGGTCATCCCCTGCGACGAAATGCTCTTCCACGAGGTTCTCCGGTTCATCTCTTGGTCAGAATCAGCAAAACCAAACCGGTTTGTAAACCTCGAACTTGACGACTTAAAACAACACTGCCACATCAGAATCAACAACAACCTAGATTTCTGGCCAGAATCTAGACCACTCCTTCACGGTCCCAGTGACAAAACTGTTTGGTAA 450 0.5089 MSTKCSQIRHIVRLRQMLRRWRNKARMSANRTPSDVPAGHVAVCVGTNLTRFVVRATYLNHPVFKKLLLQAEEEYGFSNHGPLVIPCDEMLFHEVLRFISWSESAKPNRFVNLELDDLKQHCHIRINNNLDFWPESRPLLHGPSDKTVW* 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g2048 149 Pfam Auxin responsive protein 13 98 IPR003676 GO:0009733
Vra6g2048 149 PANTHER SMALL AUXIN-UP RNA-RELATED 5 142 - -
Vra6g2048 149 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 5 142 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g2048 Vra-Chr6 37057246 37058255 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g2048 4 148 Calmodulin-binding Proteins AT4G34750 49.007 1.19e-42 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g2048 K14488 - gmx:100782525 268.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g2048 6 37057246 37058255 Vra6g2048 6 37057246 37058255 ECH
Vra6g2048 6 37057246 37058255 Vra5g1641 5 22827886 22829015 PCT