Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g2032 ATGTCGCTAAGCAAGTTTTTCGACTGGAACACTCTTCAAATTTCCGATTCAGAAGCAAGCCTCCGTAATGCAGCCATGGCAGAAGAAGTAGCACCGAATATCCAGCATCTTTTTCCCTACTCAGATGAAAGCTTTTTCCTTTCAAATGCCCTTTTTGAGTACTGCATTGACCCAAATGATGGTTTTATCTGTCCTTCAGATATTCACTCTCCTTTAGATCCTTTCACTTCATTCCCTCATCATCAAATCTTCCCAACTCATGAAGATTACAATCCTCTCCCGTGCCCAAAACGCCAAAAGTTCTTCTCCCAGGAACAACCAGAGCTTACCACACCATCCAATCATATAGATGGGTTTGCTAATTGCTACTCTTTTCAATCAGAAGAGACACAACCACAGTTTTTTTGTATGGATGAGGAGAAAGGTAATAAGGAAAGAGTCATATCTCCACAGAGTGTAGCCGCAAGAGAAAGAAGAAGAAAGATTACAAATAAGACTCAAGAACTCAGTAAGTTGGTTCCTGGTGGAACAAAAATGAACACTGCTGAGATGCTTCATGCAGCTGCAAAATACGTTAAGTATCTTCAAGCCCAAGTTGAAATGCTTGAACTCATGAACTCATTTGAGCATGAAGATAAAGCAGCACCTCCTTCTGAGATTCTACACGCTCTGGTTGTTTCTCCCTTTGTTCAAGAGAAGTTGTATGCGGTGGAAAAGTGCTTTTTGCCAAAAGAAACTGTCACCACTTTGACAAATCTTGAAGTTGTTCAATCCAGACCTACCATGGTTCAGGAACTTAAACAGCTAATTGAAACAGAATCTGAGAAAGAAAAGCAAGATTAA 843 0.4033 MSLSKFFDWNTLQISDSEASLRNAAMAEEVAPNIQHLFPYSDESFFLSNALFEYCIDPNDGFICPSDIHSPLDPFTSFPHHQIFPTHEDYNPLPCPKRQKFFSQEQPELTTPSNHIDGFANCYSFQSEETQPQFFCMDEEKGNKERVISPQSVAARERRRKITNKTQELSKLVPGGTKMNTAEMLHAAAKYVKYLQAQVEMLELMNSFEHEDKAAPPSEILHALVVSPFVQEKLYAVEKCFLPKETVTTLTNLEVVQSRPTMVQELKQLIETESEKEKQD* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g2032 280 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 143 206 IPR036638 GO:0046983
Vra6g2032 280 Pfam Helix-loop-helix DNA-binding domain 156 196 IPR011598 GO:0046983
Vra6g2032 280 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 28 265 - -
Vra6g2032 280 Gene3D - 149 210 IPR036638 GO:0046983
Vra6g2032 280 SMART finulus 152 201 IPR011598 GO:0046983
Vra6g2032 280 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 146 195 IPR011598 GO:0046983
Vra6g2032 280 PANTHER TRANSCRIPTION FACTOR BHLH52-RELATED 28 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g2032 Vra-Chr6 36911369 36912413 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g2032 35 272 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G30670 35.827 1.38e-27 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra6g2032 HLH 6.6e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g2032 - - pvu:PHAVU_001G006100g 394.815