Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g2025 ATGGAATATTGCTTCTCCTTACACATTGCTCTCATCTGGCTATTTCTTTTCAAAGGTGCTTCGTGTGCCACATTTACTCTAATCAACAAATGTGACTACACGGTGTGGCCTGGGATTTTGGCCAATGCAGGGAGCTCCGGATTGGAATCAACCGGGTTTGAACTCAAACCGGGTGGGTCACGGATCTTCCAAGCACCGCCCAATTGGTCCGGAAGATTCTGGGGCAGAACCGGCTGCAATTTTGACCCGAACACTCAACAGGGTAGTTGCACGACAGGAGACTGTGGCTCCAATCAGGTCCAATGCAACGGGGGAGGGGCAAGTCCACCGGCCACATTGGCGGAGTTCACAATCGGGTCGGGTTCTGGCACACAGGACTTTTACGATGTGAGCCTCGTTGACGGTTACAACTTGCCGTTAATTGTAGACCCAAGTGGCGGGTCGGGTACGTGCGGGTCCACCGGGTGCGTTGCGGACCTGAACCAACGGTGCCCCAACGAGCTACGCGTGGCGGATCGCGCCGCGTGTAGGAGTGCCTGTGAGGCGTTTCAGAGCCCAGAGTATTGCTGCAGCGGCGCGTACGCTTCACCCTCGACATGCAAGCCTTCGATATATTCGCAGGTATTCAAATCCGCGTGTCCGAAATCGTATAGCTACGCGTACGACGACGCCACGAGTACGTTTACCTGTACCGGAGCCGATTACGCCATCACATTCTGCCCTTCAACCACAAGCCAAAAATCTGCAAGAGATTCAGCAGCTCCTCCTTCTGGATTTGGATCAGAAACAGGGACAGGGGAGATGCCGTTGATAGTTGACAGTCCATGGTTTTCCAATTTTTTCAGTGGAATCTCATCCAAATTTCATTCATGTCCCTTCCCATATATTCTTACTCTCACTTTGCTTATCTTCTTCTCTTTGCAATACTCATAA 933 0.5188 MEYCFSLHIALIWLFLFKGASCATFTLINKCDYTVWPGILANAGSSGLESTGFELKPGGSRIFQAPPNWSGRFWGRTGCNFDPNTQQGSCTTGDCGSNQVQCNGGGASPPATLAEFTIGSGSGTQDFYDVSLVDGYNLPLIVDPSGGSGTCGSTGCVADLNQRCPNELRVADRAACRSACEAFQSPEYCCSGAYASPSTCKPSIYSQVFKSACPKSYSYAYDDATSTFTCTGADYAITFCPSTTSQKSARDSAAPPSGFGSETGTGEMPLIVDSPWFSNFFSGISSKFHSCPFPYILTLTLLIFFSLQYS* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g2025 310 SMART tha2 25 241 IPR001938 -
Vra6g2025 310 Gene3D Thaumatin 23 241 IPR037176 -
Vra6g2025 310 CDD TLP-PA 24 240 - -
Vra6g2025 310 PRINTS Pathogenesis-related protein signature 24 36 IPR001938 -
Vra6g2025 310 PRINTS Pathogenesis-related protein signature 72 83 IPR001938 -
Vra6g2025 310 PRINTS Pathogenesis-related protein signature 126 142 IPR001938 -
Vra6g2025 310 PRINTS Pathogenesis-related protein signature 231 240 IPR001938 -
Vra6g2025 310 SUPERFAMILY Osmotin, thaumatin-like protein 23 242 IPR037176 -
Vra6g2025 310 PANTHER OS03G0233200 PROTEIN 14 254 IPR001938 -
Vra6g2025 310 Pfam Thaumatin family 29 241 IPR001938 -
Vra6g2025 310 ProSiteProfiles Thaumatin family profile. 23 241 IPR001938 -
Vra6g2025 310 MobiDBLite consensus disorder prediction 245 265 - -
Vra6g2025 310 PANTHER THAUMATIN-LIKE PROTEIN 1 14 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g2025 Vra-Chr6 36843393 36845604 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g2025 3 272 Receptor kinase-like Gene Family AT5G38280 45.161 9.49e-78 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g2025 - - gmx:100786772 565.459