Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g2024 ATGGAACGCATCAATTTGTCACTCTTCTCATTTTATCTATTACTATCAAGGGTGACTTCAACAACATTTACTCTAGTTAACAAATGTGATTACACGGTGTGGCCGGGGATACTCTCAAACGCGGGTGTTCCACCTCTTTCAACTACCGGCTTGGCTCTACAAACCGGCGCGTCCTCCACAATCGCCGCACCCGCGTCTTGGGGAGGTCGTTTCTGGGGCCGGACCCTCTGCTCCGAAGACTCCACAGGCAAGTTCTCCTGCGTCACCGGCGACTGTGGCTCCGGCAAGCTCGAATGTGCCGGCAGTGGCGCCACTCCGCCGGCTACACTGGCGGAATTCACCCTCGACGGTGCCGGAGGCCTTGATTTCTTCGACGTAAGCCTTGTGGACGGCTACAACGTGCCGATGCTGGTCGTACCCCAGGGAGGCTCCGGCGAGAAGTGCATCGCCACAGGCTGCGTCGGGGACCTCAACAGCGCGTGTCCGTCGGAGCTGAAGGTGATGAGCGCGGACGGAAAGGAGGGCGTCGCGTGCAAGAGCGCGTGCGAGGCCTTCAACTCGCCGCAGTATTGCTGCAGCGGTGCATACGGCACGCCCGACACGTGCAAGCCCTCGTCTTACTCTGAGATATTCAAGAACGCGTGCCCGCGTGCTTATAGCTACGCGTACGACGACAAAACCAGCACCTTCACTTGCGCCTCCGCCGATTACACCATCACTTTTTGCCCTTCCCCTACCACCAGCCAAAAAGCATCCCAGGAGCAACAAGATGGTTCATCCACCACGCCACTGCTTAACAACGGCACAATGGTGTACGTCGGTGCTTTCGATCAGAGCGAAATCTCATGGGCCACGCGCAGCCACGTGTTCCAATCCCGAGCCGTTGCCGGCATCGTCGGTGTCACGATGGCTATGTGGCGGTTCAGCCAACTCTTCTAA 939 0.5804 MERINLSLFSFYLLLSRVTSTTFTLVNKCDYTVWPGILSNAGVPPLSTTGLALQTGASSTIAAPASWGGRFWGRTLCSEDSTGKFSCVTGDCGSGKLECAGSGATPPATLAEFTLDGAGGLDFFDVSLVDGYNVPMLVVPQGGSGEKCIATGCVGDLNSACPSELKVMSADGKEGVACKSACEAFNSPQYCCSGAYGTPDTCKPSSYSEIFKNACPRAYSYAYDDKTSTFTCASADYTITFCPSPTTSQKASQEQQDGSSTTPLLNNGTMVYVGAFDQSEISWATRSHVFQSRAVAGIVGVTMAMWRFSQLF* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g2024 312 ProSitePatterns Thaumatin family signature. 83 99 IPR017949 -
Vra6g2024 312 CDD TLP-PA 22 242 - -
Vra6g2024 312 ProSiteProfiles Thaumatin family profile. 20 243 IPR001938 -
Vra6g2024 312 Gene3D Thaumatin 21 243 IPR037176 -
Vra6g2024 312 PRINTS Pathogenesis-related protein signature 22 34 IPR001938 -
Vra6g2024 312 PRINTS Pathogenesis-related protein signature 70 81 IPR001938 -
Vra6g2024 312 PRINTS Pathogenesis-related protein signature 122 138 IPR001938 -
Vra6g2024 312 PRINTS Pathogenesis-related protein signature 233 242 IPR001938 -
Vra6g2024 312 PIRSF PR5 2 282 IPR001938 -
Vra6g2024 312 PANTHER BNAA02G17480D PROTEIN 14 268 - -
Vra6g2024 312 SUPERFAMILY Osmotin, thaumatin-like protein 21 244 IPR037176 -
Vra6g2024 312 SMART tha2 23 243 IPR001938 -
Vra6g2024 312 Pfam Thaumatin family 27 243 IPR001938 -
Vra6g2024 312 PANTHER OS03G0233200 PROTEIN 14 268 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g2024 Vra-Chr6 36834956 36837663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g2024 8 258 Receptor kinase-like Gene Family AT5G38280 53.543 1.78e-92 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g2024 - - gmx:100787631 558.91