Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g2007 ATGCTGGACTCTGTCCTTCTGGCGCTGTTCTTGCCTTGCCTTGGCATGACCGCCGTTTTCGTCGTTTACATGTGTCTTCTATGGTACGCCACCACTCACCACCCCGATCCCCACCTACCGGCCAAGCCAGTCTCTGACTCCGGCCTCTCCCCTTCCCAGCTCCAAAAGCTCCCCTCCATCACCGGAAAAGACCTTCTCATGGGCTCCGAATGCGCCGTCTGCCTCGACGACATCGCCACCGACCAACCCGCTCGATTGGTTCCCGGTTGCAACCACGCCTTCCATGTGGAATGCGCTGACACCTGGCTCTCCAAGCACCCTCTCTGCCCTCTCTGCAGAGCCAAACTCGACCCCGCGCTTTTCTCTTCCTCAGAAAATCCTTGCTGA 387 0.5891 MLDSVLLALFLPCLGMTAVFVVYMCLLWYATTHHPDPHLPAKPVSDSGLSPSQLQKLPSITGKDLLMGSECAVCLDDIATDQPARLVPGCNHAFHVECADTWLSKHPLCPLCRAKLDPALFSSSENPC* 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g2007 128 SMART ring_2 71 112 IPR001841 -
Vra6g2007 128 SUPERFAMILY RING/U-box 59 118 - -
Vra6g2007 128 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 128 - -
Vra6g2007 128 Pfam Ring finger domain 70 113 IPR001841 -
Vra6g2007 128 ProSiteProfiles Zinc finger RING-type profile. 71 113 IPR001841 -
Vra6g2007 128 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 37 119 IPR013083 -
Vra6g2007 128 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL23 1 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g2007 Vra-Chr6 36712208 36713446 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g2007 1 128 C3H Transcription Factor Family AT5G42200 50.000 1.52e-42 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g2007 K19037 - gmx:100817919 246.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g2007 6 36712208 36713446 Vra6g2007 6 36712208 36713446 ECH
Vra6g2007 6 36712208 36713446 Vra5g1681 5 23140353 23141254 PCT