Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g2006 ATGGGGTTGGGGTTGTTTAAGGCATTGTTTTGCTGCAGAAAGGCCCGTCAAATTGAAATCGAGGAGTCATGGGAGTCCTCTCCGGAGCATAGGTCGAAAGAAGATAGTAGAAAAAGGAAAGTAGTAGTTGGTGAAGATGGTGCTGAGAAGAAGAGGAGTACGCCACAAACGGGAGCTATTCTGGGAAAACCGTACGTAAAGATAGAGCAAATGTACGAGATGAAGAAAGAGCTAGGAAGCGGGCAGTGGGGTGTGACTTATCTGTGCGTGGAGAAGACGACGCAGAGAGAGTACGCATGCAAGTCGATTGCGAAGACGAAGCTGGTGAGTGCGCAGGAGATCGAGGACGTGAGAAGAGAGGTTATGATTCTGCAGCATCTGTCGGGGCAACCCAACATTGTAGAGTTCAGAGGGGCTTTCGAAGACAGACACAGCGTGCACCTGGTGATGGAGCTGTGCAGTGGAGGCGAACTCTTCGACCGCATCATTGCCAAAGGGAACTACTCAGAGCGTGAGGCGGCGACGGTGATGAGACAAATCGTGAATGTGGTTCATGCATGTCACTTTATGGGAGTCATGCATAGAGACCTTAAGCCAGAAAATTTCTTGCTTGCTAATAAGGATCCCAAGGCACCGTTGAAAGCCACCGATTTTGGATTGTCCGTCTTCATTGAAGAAGGTAGAGTGTATAAGGAGGTTGTTGGAAGTGCATACTATGTGGCTCCAGAGGTGTTAAGGAAGAGTTATGGAAAAGAAATAGATGTGTGGAGTGCAGGAATAATTTTATACATCCTTCTAAGTGGAGTGCCTCCATTTTGGGCTGAAACCGAGAAGGGCATATTTGATGCAATTTCGGAAGGCAAGCTTGATCTGGAGAGCGCACCATGGCCTTCTATTTCAGCTGCTGCAAAGGATCTGATCAGAAAAATGTTGAATCATGACCCTAAGAAACGCATTACAGCTGCTGAAGCCCTTGAACACCCGTGGATGAAGGAGGGTGGTGAAGCATCTGACAAACCTATAGACAATGCTGTCTTGACTAGGATGAAACAGTTCAGAGCAATGAACAAGATGAAGAAACTTGCTCTAAAGGTTATAGCAGAAAACCTTTCAGAGGAGGAAATCAAGGGCTTGAAACAAATGTTCAACAATATGGACACTGATCGCAGTGGCACAATCACATACGAGGAACTCAAATCTGGATTGACCAAATTGGGATCCAAGCTTAGTGAATATGAAATAAAGCAGCTAATGGAAGCTGCTGATGTTGACAAGAGTGGAACTATTGACTATCAAGAATTCATCACTGCCACTATAAACCGACATAAACTGGAGAAGGAAGAGAATCTGTATAAGGCTTTTCAATACTTTGACAAGGACAACAGTGGATATATAACAAGAGAAGAGCTTAGACAAGCATTGACTGAATATCAGATGGGAGATGAGGCAACTATAGATGAAGTGATCGATGATGTTGATACTGATAACGATGGGAAAATAAATTACCAGGAGTTTGTGGCAATGATGAGAAAAGGGATTCTGGATAATGATGAGAAGGAGAAACCACGATAG 1572 0.4466 MGLGLFKALFCCRKARQIEIEESWESSPEHRSKEDSRKRKVVVGEDGAEKKRSTPQTGAILGKPYVKIEQMYEMKKELGSGQWGVTYLCVEKTTQREYACKSIAKTKLVSAQEIEDVRREVMILQHLSGQPNIVEFRGAFEDRHSVHLVMELCSGGELFDRIIAKGNYSEREAATVMRQIVNVVHACHFMGVMHRDLKPENFLLANKDPKAPLKATDFGLSVFIEEGRVYKEVVGSAYYVAPEVLRKSYGKEIDVWSAGIILYILLSGVPPFWAETEKGIFDAISEGKLDLESAPWPSISAAAKDLIRKMLNHDPKKRITAAEALEHPWMKEGGEASDKPIDNAVLTRMKQFRAMNKMKKLALKVIAENLSEEEIKGLKQMFNNMDTDRSGTITYEELKSGLTKLGSKLSEYEIKQLMEAADVDKSGTIDYQEFITATINRHKLEKEENLYKAFQYFDKDNSGYITREELRQALTEYQMGDEATIDEVIDDVDTDNDGKINYQEFVAMMRKGILDNDEKEKPR* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g2006 523 Gene3D - 338 513 - -
Vra6g2006 523 Pfam Protein kinase domain 72 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g2006 523 ProSiteProfiles EF-hand calcium-binding domain profile. 409 444 IPR002048 GO:0005509
Vra6g2006 523 ProSitePatterns EF-hand calcium-binding domain. 458 470 IPR018247 -
Vra6g2006 523 MobiDBLite consensus disorder prediction 23 52 - -
Vra6g2006 523 SUPERFAMILY Protein kinase-like (PK-like) 72 337 IPR011009 -
Vra6g2006 523 ProSiteProfiles EF-hand calcium-binding domain profile. 445 480 IPR002048 GO:0005509
Vra6g2006 523 ProSitePatterns EF-hand calcium-binding domain. 493 505 IPR018247 -
Vra6g2006 523 Gene3D Transferase(Phosphotransferase) domain 1 158 337 - -
Vra6g2006 523 ProSiteProfiles Protein kinase domain profile. 72 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g2006 523 ProSitePatterns Protein kinases ATP-binding region signature. 78 105 IPR017441 GO:0005524
Vra6g2006 523 CDD STKc_CAMK 72 329 - -
Vra6g2006 523 ProSiteProfiles EF-hand calcium-binding domain profile. 373 408 IPR002048 GO:0005509
Vra6g2006 523 Gene3D Phosphorylase Kinase; domain 1 74 157 - -
Vra6g2006 523 ProSitePatterns EF-hand calcium-binding domain. 386 398 IPR018247 -
Vra6g2006 523 SMART efh_1 413 441 IPR002048 GO:0005509
Vra6g2006 523 SMART efh_1 484 512 IPR002048 GO:0005509
Vra6g2006 523 SMART efh_1 449 477 IPR002048 GO:0005509
Vra6g2006 523 SMART efh_1 377 405 IPR002048 GO:0005509
Vra6g2006 523 ProSiteProfiles EF-hand calcium-binding domain profile. 481 515 IPR002048 GO:0005509
Vra6g2006 523 MobiDBLite consensus disorder prediction 23 56 - -
Vra6g2006 523 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 29 44 516 - -
Vra6g2006 523 ProSitePatterns Serine/Threonine protein kinases active-site signature. 192 204 IPR008271 GO:0004672|GO:0006468
Vra6g2006 523 PANTHER SERINE/THREONINE-PROTEIN KINASE 44 516 - -
Vra6g2006 523 SUPERFAMILY EF-hand 369 510 IPR011992 -
Vra6g2006 523 ProSitePatterns EF-hand calcium-binding domain. 422 434 IPR018247 -
Vra6g2006 523 SMART serkin_6 72 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g2006 523 Pfam EF-hand domain pair 447 510 IPR002048 GO:0005509
Vra6g2006 523 Pfam EF-hand domain pair 378 438 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g2006 Vra-Chr6 36703589 36707997 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g2006 52 523 EF-hand Containing Proteins AT3G20410 70.975 0.0 724
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vra6g2006 Pkinase 3.4e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g2006 K13412 - gmx:100816157 862.448