Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1997 ATGGGCTACTTGAAGCAAGAACAAACCAATCAACAAACTGATCTAGCTGCAGTTTTACGTGATGGAAAAGAAATACTTCTTCAGGGATTCAACTGGGAGTCTCACAAATACAATTGGTGGAATAACTTGGAAACTAAAGTTCCTGACATTGCTAAATCTGGATTTACATCAGTGTGGTTGCCACCACCATATCATTCATTTTCGCCTGAAGGTTACACTCCACAGAATCTCTACTCTCTCAATACTAAATATGGTTCTGAACGTCAGCTAAGAGCTTTGCTTCAGAAAATGAAACAATATAGAGTCAGAGCAATGGCTGACATAGTTATCAATCATCGCACTGGCACCACTCAAGGACGTGGAGGAATATATAATCGTTTTGATGGAATTCCTTTAGCATGGGATGAACGTGCAGTAACATCATGTACTGGAGGACTGGGAAATCGAAGCACTGGTGCTGTTTTTCAAGGATTTCCTAACATTGACCATACTCAGGACTTTGTGAGAAAAGATATCATTAACTGGCTTCGCTGGTTGCGCCATGATGTAGGTTTTCAAGATTTTCGATTTGATTTTGCAAAGGGGTTTTCAGCAAAATTCGTGAGGGAATACATCGAGGGAGCAAAACCTTTGTTTTCTGTTGGAGAGTACTGGGATACTTGTAACTATAAGGGTTCTTCTTTAGACTATAATCAAGATGGTCATAGACAACGTATAGTTAATTGGATAGATGGTACAGGACAACTTTCAACTGCATTTGATTTTACAACCAAAGGAATTCTTCAGGAAGCTGTGAGGGGAGAGTTTTGGCGATTGCGTGATGCTCAAGGAAAGCCACCCGGTGTGATGGGGTGGTGGTCATCAAGATCTGTCACATTTATTGATAATCATGACACAGGTTCAACACAGGGTCATTGGCCATTCCCAAAAGACCATATTATGGAGGGATACGCGTATATATTGACTCATCCTGGAATACCAACAGTATTTTACGATCACTTTTATGACTGGGGCAACTCAATTCGGGACCAGATTGTGAAATTGATTGACATTCGAAAGCGTCATGGTATTCAAAGTAGATCACCCGTGAGGATTGTGGAGGCCAAACACGACCTCTACTCTGCAATCATCGGCGAAAAATTATGCATGAAAATTGGATATGGTTCATGGTGTCCCTCTGGGAGGGAATGGACACTATCAACTTCTGGCCACAATTACGCAGTGTGGCATAAATAG 1236 0.4134 MGYLKQEQTNQQTDLAAVLRDGKEILLQGFNWESHKYNWWNNLETKVPDIAKSGFTSVWLPPPYHSFSPEGYTPQNLYSLNTKYGSERQLRALLQKMKQYRVRAMADIVINHRTGTTQGRGGIYNRFDGIPLAWDERAVTSCTGGLGNRSTGAVFQGFPNIDHTQDFVRKDIINWLRWLRHDVGFQDFRFDFAKGFSAKFVREYIEGAKPLFSVGEYWDTCNYKGSSLDYNQDGHRQRIVNWIDGTGQLSTAFDFTTKGILQEAVRGEFWRLRDAQGKPPGVMGWWSSRSVTFIDNHDTGSTQGHWPFPKDHIMEGYAYILTHPGIPTVFYDHFYDWGNSIRDQIVKLIDIRKRHGIQSRSPVRIVEAKHDLYSAIIGEKLCMKIGYGSWCPSGREWTLSTSGHNYAVWHK* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1997 411 SMART aamy 24 364 IPR006047 GO:0005975
Vra6g1997 411 PANTHER ALPHA-AMYLASE 20 411 - -
Vra6g1997 411 SMART alpha-amyl_c2 353 411 IPR012850 GO:0004556|GO:0005509|GO:0005975
Vra6g1997 411 PANTHER ALPHA-AMYLASE 2-RELATED 20 411 - -
Vra6g1997 411 Pfam Alpha amylase, catalytic domain 46 114 IPR006047 GO:0005975
Vra6g1997 411 Gene3D Glycosidases 24 356 - -
Vra6g1997 411 PRINTS Alpha-amylase signature 101 112 IPR006046 GO:0004556|GO:0005975|GO:0043169
Vra6g1997 411 PRINTS Alpha-amylase signature 185 196 IPR006046 GO:0004556|GO:0005975|GO:0043169
Vra6g1997 411 PRINTS Alpha-amylase signature 288 300 IPR006046 GO:0004556|GO:0005975|GO:0043169
Vra6g1997 411 CDD AmyAc_arch_bac_plant_AmyA 25 363 - -
Vra6g1997 411 SUPERFAMILY Glycosyl hydrolase domain 357 411 - -
Vra6g1997 411 Gene3D - 357 411 IPR013780 -
Vra6g1997 411 Pfam Alpha-amylase C-terminal beta-sheet domain 354 410 IPR012850 GO:0004556|GO:0005509|GO:0005975
Vra6g1997 411 PIRSF Alpha-amylase_plant 3 411 IPR013775 GO:0004556|GO:0005509|GO:0005975
Vra6g1997 411 SUPERFAMILY (Trans)glycosidases 30 342 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1997 Vra-Chr6 36662914 36667082 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1997 1 411 Glycoside Hydrolase AT1G76130 74.576 0.0 674
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1997 K01176 - gmx:100813490 788.875