Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1996 ATGTTGTCATTTAGTCGCCATATTCTGAATCCTTGTACACGACATTCAAATCTCGCCCTCTTAAATTCGAGGACAACAACCTTAACCTTCCTCAAATCTCGTTCGTTTCCTCTTCTTTTATCTTTTTCAATTCCAAAGACCAAAACAATGGGTTCTCTTTCCGCTCTTCACCACCCAATACAATATCCCACTGCTCCCAGAGACGACTCCGTCGTTGACCACTTCCACGGGGTCAAGATTGCCGATCCTTACCGATGGCTGGAGAATCCGGAGGCCGAGGAAGTTAAAGAGTTCGTGCAGAAACAGGTGTCGTTGACGGATTCGGTGCTGCAGAGGTGCGAGTGCAGGGACAAGCTGTCGGAGAAGATAACGAAGCTGTTTGATAATCCTCGTTACAACGCTCCCTTCCGGCGTGGGAATAAGTACTTTTACTTCCACAACACGGGTCTTCAGGCGCAGAGCGTGCTTTACTTGCAGGACAGTTTAGAGGCTGAGGCTGAGGTTTTGCTCGATCCCAATGCGCTCAGTGAAGATGGAACTGTCTCCCTCAACACGCTGTCCGTGAGCAAAGATGCTGAGTTCTTGGCCTATGGACTTAGTTCCAGTGGTAGCGACTGGGTCACAATAAAAGTCATGCGTATTCGTGACAGGAGTGTTCAGCCTGATACTTTATCTTGGGTCAAGTTTTCCTCCATTAGTTGGACGCACGATAGCAAAGGTTTCTTTTACAGCCGCTATCCAGCTCCAAAGGATGGAGAAGTAGCAGATGCTGGGACTGAAACTAATGCAAACCTTCATCATGAACTTTGTTATCATTTTTTGGGTACTGATCAATCGGAAGACATTCTTTGTTGGAGAGATCCTGAGAATCCTAAATATATGTTTGGAGGAAGTATTACCGAGGATGGGAAGTATGTTCTTCTGTATATTGATGAAGGGTGTGATCCAGTTAACAAGCTTTACTACTACGACTTGTCTGAACTTCCAAACGGGCTGGAAAGTTTTCGGAATGAAAATTCCCTCCTTCCATTTGTCAAGCTTGTTGATAAATTCGATGGACAATATCATGCCATTGCAAATGATGACACCTTGTTTACATTTTTAACTAATAAAGATGCTCCAAAATACAAAGTAGTTCGAGTAGATTTGAAAGAACCAAATGTTTGGACTGATGTTATCAAAGAGTCTGAAAAAGATGTGCTTGAGTCAGCACGTGCTGTAAACGGTAACCAAATTATTGTGAGCTACTTGAGTGATGTGAAATATGTTCTGCAAGTCAGAGACTTGGAAACAGGTTCCTTGCAACATGAATTACCAATTGACATTGGCACAGTCAGTGAAATTTCTGGGCGGCGTGAGGATTCCGAGGTTTTCATTGGTTTTACAAGCTTTTTGACTCCTGGAATTATATATCAGTGCGACCTGAGAACACAAGTTCCTGAAATGAAGATATTTCGTGAGATTGTTGTCCCTGGGTTTGATCGCTCCGAGTTTCATGTCAATCAGGTTTTTGTGCCTAGTAAAGACGGTACCAAGATTCCAATGTTTATTGTTTCCAGAAAGGATATTGCTTTGGATGGTTCACACCCTTGTCTGCTATATGGATATGGCGGTTTTAACATAAGTCTTACTCCATATTTCAGCATCAGTCGTACTGTACTGGCGAGACATTTAGGTGTTGTTTTCTGCATAGCAAATATTCGTGGTGGTGGAGAATATGGGGAGGATTGGCACAAAGCTGGCTCCCTTGCAAACAAGCAAAACTGCTTTGATGACTTCATTTCAGCAGCTGAATATCTTGTATCTGCTGGTTACACCCAACCCAAAAAGTTATGTATCGAGGGTGGAAGTAATGGTGGACTTCTTGTTGGTGCTTGCATTAATCAAAGACCTGATCTTTTCGGTTGTGCGCTGGCTCATGTTGGTGTTATGGACATGCTACGGTTCCACAAATTTACAATAGGTCATGCTTGGACCACAGATTATGGTTGTTCAGACAAGGAGGAAGAATTTCATTGGCTAATCAAGTACTCACCATTGCATAACGTCCAGAGACCTTGGGAAAAGCATCCTAATCAGTCAATTCAATACCCATCAACAATGCTGTTGACTGCTGATCACGATGATCGTGTTGTGCCATTGCATTCATTAAAGCTATTGGCGACCTTGCAGTATGTCCTCGTTACTAGTCTTGATAAAAGTCCCCAGACGAACCCTATAATTGGTCGCATTGAGTGCAAGGCTGGGCATGGTGCAGGGCGTCCTACAAAGAAAATGATAGATGAAGCTGCTGACCGGTACAGTTTCATGGCGAAAATGTTAGATGCACATTGGATCGAGTAG 2343 0.4345 MLSFSRHILNPCTRHSNLALLNSRTTTLTFLKSRSFPLLLSFSIPKTKTMGSLSALHHPIQYPTAPRDDSVVDHFHGVKIADPYRWLENPEAEEVKEFVQKQVSLTDSVLQRCECRDKLSEKITKLFDNPRYNAPFRRGNKYFYFHNTGLQAQSVLYLQDSLEAEAEVLLDPNALSEDGTVSLNTLSVSKDAEFLAYGLSSSGSDWVTIKVMRIRDRSVQPDTLSWVKFSSISWTHDSKGFFYSRYPAPKDGEVADAGTETNANLHHELCYHFLGTDQSEDILCWRDPENPKYMFGGSITEDGKYVLLYIDEGCDPVNKLYYYDLSELPNGLESFRNENSLLPFVKLVDKFDGQYHAIANDDTLFTFLTNKDAPKYKVVRVDLKEPNVWTDVIKESEKDVLESARAVNGNQIIVSYLSDVKYVLQVRDLETGSLQHELPIDIGTVSEISGRREDSEVFIGFTSFLTPGIIYQCDLRTQVPEMKIFREIVVPGFDRSEFHVNQVFVPSKDGTKIPMFIVSRKDIALDGSHPCLLYGYGGFNISLTPYFSISRTVLARHLGVVFCIANIRGGGEYGEDWHKAGSLANKQNCFDDFISAAEYLVSAGYTQPKKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRFHKFTIGHAWTTDYGCSDKEEEFHWLIKYSPLHNVQRPWEKHPNQSIQYPSTMLLTADHDDRVVPLHSLKLLATLQYVLVTSLDKSPQTNPIIGRIECKAGHGAGRPTKKMIDEAADRYSFMAKMLDAHWIE* 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1996 780 SUPERFAMILY alpha/beta-Hydrolases 500 724 IPR029058 -
Vra6g1996 780 PANTHER PROLYL ENDOPEPTIDASE 46 780 - -
Vra6g1996 780 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 530 548 IPR002470 GO:0004252|GO:0006508
Vra6g1996 780 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 557 581 IPR002470 GO:0004252|GO:0006508
Vra6g1996 780 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 585 604 IPR002470 GO:0004252|GO:0006508
Vra6g1996 780 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 615 635 IPR002470 GO:0004252|GO:0006508
Vra6g1996 780 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 697 719 IPR002470 GO:0004252|GO:0006508
Vra6g1996 780 Pfam Prolyl oligopeptidase, N-terminal beta-propeller domain 63 480 IPR023302 GO:0004252
Vra6g1996 780 Gene3D - 130 489 - -
Vra6g1996 780 Pfam Prolyl oligopeptidase family 546 775 IPR001375 GO:0006508|GO:0008236
Vra6g1996 780 Gene3D alpha/beta hydrolase 71 770 IPR029058 -
Vra6g1996 780 SUPERFAMILY Peptidase/esterase 'gauge' domain 59 483 - -
Vra6g1996 780 PANTHER PROLYL OLIGOPEPTIDASE-LIKE PROTEIN 46 780 - -
Vra6g1996 780 ProSitePatterns Prolyl endopeptidase family serine active site. 592 622 IPR002471 GO:0004252|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1996 Vra-Chr6 36648727 36653071 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1996 K01322 - gmx:100812955 1411.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1996 6 36648727 36653071 Vra6g1996 6 36648727 36653071 ECH
Vra6g1996 6 36648727 36653071 Vra5g1695 5 23260792 23267021 PCT