LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra6g1993	ATGGCGGGTCAGTTCTCCAATGAAAGCTCCAGTACTGGAAATATTTCAGCAGAGTGTTCAGATTCAACTGTTCAGCTCAATATCAAAACTCTAGATTCCCGCATCTACAGTTTTCAAGTGAACAAAAATATGCCTGTTCCGTTGTTCAAAGAGAAAATTGCAAATGAAATTGGTGTTCCAGTTAGTCAGCAACGATTGATATTTAGAGGAAAAGTCTTAAAGGATGAACATGTTCTTTCTGAGTATCATGTTGAGAATGGGCATACATTGCATTTAGTTGAAAGACAACCAAATCAGCCACAGGCTTCTGGTACGAGTGCTGATGAGCCCACTGGTACAAGTAGTAACCAAGGTTTAAATTCAGGAAATGATGTGGGCTCAGGGCCTCCTCGTAACCGTCTTGGGCAAATTTCACACAGTGTTGTTCTTGGGACATTTAACGTGGGGGAACAGGGTGAAGGAATTGTTCATGACATCACTCGGGTTATTGGGCATGTTTTAAATTCTATTGGAAACGGAGGCCAAAGTACAGTAAACGGTCCTAATGCTGTGCAAACTTCTTCTGCTCAACCAGGCAATGAAACTGAAGGAATGCGTGCTGGAAATCAAAACCCAGCAGGAAACCAGGCACCATCTGGACAGACATTTCATGGTCCAATATCTGTATCTCATGTTCAGATTCCTGTGGCAGCAGGATCCATACCCCTCCCATCTCTCAATGCACCAATTCCTGATTCATTGAACACACTGATCGAGTTTATGAATCGCATGGAACAGACACTGACACAAAATGGTTATCAGTCAAATTTTTCGTCAGCTAACCCTGGAGATCAGAGAGTGGAATTGCCTTCTAATGCGCAAGGGATGCCGACTATTGAAGCATTAAGTACTGTCTTGCGTCGTGCAGAGAGATTACTTGGTGGTCAAACTGTTGCTGCACTATCTCATATTGCAGGACGCTTGGAAAGAGAAAGAGCTTCTGCTGATCCACGTATAAGAGGTCAAATACAGTCAGAGTCAGCGCAAATAGGACTTGCTATGCAGCATTTGGGTGCACTTCTACTTGAACTTGGCCGAACAATGCTGACACTGCGTATGGGACAATCTTCTGTAGAATCAGTTGTTAATGCTGGACCAGCTGTTTACATTTCTCCATCAGGGCCAAATCCTATAATGGCGCAGCCTTTTCCACTTCAGACAAGCTCCCTCTTTGGTGGCCCACTTCCCTCCTCAACTCCTGGAACTTTGGGTACCATTGGTATTGGAAGTGCTCCTAGGAACGTGAACATTCATATACATGCTGGTACCTCTATTCCCATTGTTTCAGCAATTGGTTCTAGACCAAATAATGGGGAAGGGACCCGAAGTGAACAGCATAATGAGCCTGGTTCTGGTGGTTCAAGTTCAACACGGCAATTACCTGTTAGAAATGTTATAGCCGCAACTATCCCATCACACCCTCCTAGTGTTGGAGTCTCTAGTAGCACGCAAACTGGGTTCAGTGTTTCTTCTTCACAGCCACCTGATTCAGCTTCATTGTCGTCTGCTTTAGCTGAAATTAATGCTCGTCTTATGAATGTTGTTGGCAGTATGCAAGGAGATAACACAGCTCCATCAGGTGAAATTGAATCAATCAGCAGGGACTCATCTTCTGGATCTGAATCAAGACCTTCTACACTAAATGCACAGCAAGATACCATGGAAGCGAATTTCTTTGGGGCTTCCAGTGCTTCCTTAGTTGGCAGTTCGTCTGAAAGTGAGCTCCAAACTGAGGCAGTTCAAACCTCTGGTAATGCTGAGAGAGATGTTTTAGTTGACGAATTTATTTCTTCTTCCAAACAAGATTTACAAAGTTGTTCTAGTGGAGAAACTATTGTTAAACCAGAAAAAGATGGTGGCGTTTCAGCTGTCAGTGACGAACAAGATGTAACTGAACCTGCCAAGTCTGCTCCTCTAGGATTGGGTATGGGTGGCTTAGAGCGTAAGAAGCGAAACAGACCTCAACCTCCTGTGAGTAAAGTTGCTGATGATGGATCTTCCAGTTCTTCTGTCGATAAAAAGCAAACCAGAACAGATGGTCAACATATACTACAAACTCTCGCAAGTCATGGATCTGCATTGAATTCAAGAAATGTTAATGGTCCATCCCAGCGACCCTTGCCCTCCAGTGATCGTCCCATTGATGTGGCTGGTTTAATGTCTCAGGCTTTACAAAGTCCTGCTTTGAATGGTTTGTTGGAAGGGGTTTCACAGCAAACTGGAGTTGACTCACCTGATGGTTTGAGAAATATGTTGCAGCAGTTCACACAGAGCCCACAGCTGATGAATACAGTCAACCAAATTGTCCAACAGGTTGGCAGTCAGGATGTGGGGAATATGTTTGCTGGAGCAGAAAGAGGGCAGGGTGGTGGTATTGACATTTCAAGGATGTTTCAACAGATGATGCCCATTGTATCTCGAGCTCTTGGTGGGGCAAATCCTTCCTCACTGTTCTCTATTGAAGAAGCAGAACCTGGTGCACTCCACCAAGATGGAACGGTTAACAGAGATGAATATTCTGATAATCCTAGTTTACAGCTCGACCTTCAACCACTGGCTGAGAGGATTGAGCATTTGAGTCCTTCTGTAGATATTTTCGGTGCTGTAGCTGAAAATGCTGTCCAGCTATCTGGCTTGGGAAGCGTTTCTAATGATCTTCTGGATGAGTTATGCCACAATGAGAGTCTTGCCAGGGAATATGTAGATATGTTGCGATATGATGTAAGTAAGCTGCTCGAGGGACGTTCTGAAGCGGACAAATCCTAA	2805	0.4421	MAGQFSNESSSTGNISAECSDSTVQLNIKTLDSRIYSFQVNKNMPVPLFKEKIANEIGVPVSQQRLIFRGKVLKDEHVLSEYHVENGHTLHLVERQPNQPQASGTSADEPTGTSSNQGLNSGNDVGSGPPRNRLGQISHSVVLGTFNVGEQGEGIVHDITRVIGHVLNSIGNGGQSTVNGPNAVQTSSAQPGNETEGMRAGNQNPAGNQAPSGQTFHGPISVSHVQIPVAAGSIPLPSLNAPIPDSLNTLIEFMNRMEQTLTQNGYQSNFSSANPGDQRVELPSNAQGMPTIEALSTVLRRAERLLGGQTVAALSHIAGRLERERASADPRIRGQIQSESAQIGLAMQHLGALLLELGRTMLTLRMGQSSVESVVNAGPAVYISPSGPNPIMAQPFPLQTSSLFGGPLPSSTPGTLGTIGIGSAPRNVNIHIHAGTSIPIVSAIGSRPNNGEGTRSEQHNEPGSGGSSSTRQLPVRNVIAATIPSHPPSVGVSSSTQTGFSVSSSQPPDSASLSSALAEINARLMNVVGSMQGDNTAPSGEIESISRDSSSGSESRPSTLNAQQDTMEANFFGASSASLVGSSSESELQTEAVQTSGNAERDVLVDEFISSSKQDLQSCSSGETIVKPEKDGGVSAVSDEQDVTEPAKSAPLGLGMGGLERKKRNRPQPPVSKVADDGSSSSSVDKKQTRTDGQHILQTLASHGSALNSRNVNGPSQRPLPSSDRPIDVAGLMSQALQSPALNGLLEGVSQQTGVDSPDGLRNMLQQFTQSPQLMNTVNQIVQQVGSQDVGNMFAGAERGQGGGIDISRMFQQMMPIVSRALGGANPSSLFSIEEAEPGALHQDGTVNRDEYSDNPSLQLDLQPLAERIEHLSPSVDIFGAVAENAVQLSGLGSVSNDLLDELCHNESLAREYVDMLRYDVSKLLEGRSEADKS*	935

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra6g1993	934	MobiDBLite	consensus disorder prediction	173	219	-	-
	Vra6g1993	934	MobiDBLite	consensus disorder prediction	93	127	-	-
	Vra6g1993	934	ProSiteProfiles	Ubiquitin domain profile.	24	99	IPR000626	GO:0005515
	Vra6g1993	934	MobiDBLite	consensus disorder prediction	530	561	-	-
	Vra6g1993	934	MobiDBLite	consensus disorder prediction	487	514	-	-
	Vra6g1993	934	CDD	Ubl_ubiquitin_like	26	93	-	-
	Vra6g1993	934	MobiDBLite	consensus disorder prediction	442	476	-	-
	Vra6g1993	934	MobiDBLite	consensus disorder prediction	93	135	-	-
	Vra6g1993	934	MobiDBLite	consensus disorder prediction	611	727	-	-
	Vra6g1993	934	PANTHER	OS07G0498800 PROTEIN	5	932	-	-
	Vra6g1993	934	MobiDBLite	consensus disorder prediction	674	720	-	-
	Vra6g1993	934	Pfam	Ubiquitin family	26	96	IPR000626	GO:0005515
	Vra6g1993	934	PRINTS	Ubiquitin signature	55	75	IPR019956	-
	Vra6g1993	934	PRINTS	Ubiquitin signature	76	97	IPR019956	-
	Vra6g1993	934	PANTHER	LARGE PROLINE-RICH PROTEIN BAG6	5	932	-	-
	Vra6g1993	934	SMART	ubq_7	24	95	IPR000626	GO:0005515
	Vra6g1993	934	MobiDBLite	consensus disorder prediction	441	514	-	-
	Vra6g1993	934	Gene3D	-	13	108	-	-
	Vra6g1993	934	SUPERFAMILY	Ubiquitin-like	19	99	IPR029071	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra6g1993	Vra-Chr6	36621547	36633651	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra6g1993	24	95	Cytoplasmic Ribosomal Protein Gene Family	AT3G52590	38.889	2.26e-10	57.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra6g1993	-		-	gmx:100811870	1415.59