Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1991 ATGATGGAAGAGCAGCAAATAGACCAAAGGAGTGGCTTTTGTCCTTCCAACTCAGTCTTCTACAGCAAGAGGAAGCCACTCCCACTCCCTCCAAACAACGCCCTCGACGTCACCACCTTCATCTCCTCCCGAGCACACCGTGGAACCACCGCCTTCATCGACGCCGCCACAGGCCACCACCTCAGCTACACCCAGCTATGGCGATCGGTGGAGGGCGTCGCCGCTTCCCTCTGGGACATGGGGATCCGAAAGGGCAACGTGGTTCTTCTCCTCTCTCCCAACTCCATCGACTTCCCGGTTGTGTGCCTCGCCGTCATGTCCCTGGGCGCCGTCATCACCACCACCAACCCCCTCAACACCACGCGGGAAATCGCCAAGCAGATCGCCGATTCCAAGCCCCTCCTCGCCTTCACCACCTCTCTCTTGCTCCCCAAACTCACCCAGGCAGCACCCTCTCTACCAATCGTTCTCATGGACGCCACCACTCATCCACCCATTCCCAACGCCAAAATTGTAGCCACGCTCCACGACATGGCCCAGAAGGAACCCAGTGCTCAGCGCGTGAGGGAGCGCGTGGAGCTGGACGACACGGCCACCCTGCTCTACTCCTCTGGCACTACGGGACCGAGCAAGGGCGTGCTTTCGTCCCACCGGAACCTCATAGCCATGGTCCAAATCGTCCTCGGTCGCTTCCACGTTGGTGACACCGAAACCTACATCTGCACGGTCCCCATGTTTCACATATACGGTCTCGTCGCCTTCGCCACCGGCCTCCTGGCCTCCGGCTCCACCATCGTCGTCCTCTCCAAGTTCGAGATGCACGACATGCTCTCTGCCATCCAGAGATTCAGCGCCACCTACCTCCCCCTGGTTCCACCCATTCTGGTTGCCATGCTCAACAACGCGGACGCCATCAAGAAAAAATACGATATCAAGTCCTTGCATTGGGTTCTATCCGGCGGTGCTCCCTTGAGTAAAGAAGTCATAGAGGGGTTTGTCGACAAGTACCCCAACGTCACCATACTTCAGGGTTATGGTTTGACGGAATCCACCGGTGTCGGGGCCTCCACGGACTCCTTGGAGGAGAGTCGCAGATACGGCACCGCGGGCCTCTTGTCGCCGGGCACCCAAGCCATGATTGTCGACCCTGACTCCGGCCAGTCGCTTCCGGTTAACCGCACCGGTGAGCTCTGGCTGAGGGGCCCCACCATCATGAAAGGTTATTTCAGTAACGAAGAGGCGACGACATCAACCCTTGATTCAAAAGGATGGTTAAGAACAGGGGATGTTTGCTACATTGACAGTGATGGATTTATATTTATAGTGGATCGATTAAAGGAGCTTATAAAATACAAGGGATATCAGGTACCTCCAGCAGAACTTGAGGCCTTGTTACTGACTCATGATGCTATTTTAGATGCTGCTGTTATCCCGTATCCAGATAAGGAGGCTGGGCAGTTTCCGATGGCATACGTGGTGAGGAAGGATGGAAGTAGCCTGTCGGAAAGCCAAGTTATGAATTTTGTTGCAGAACAGGTGGCTCCCTACAAGCGGATTCGAAAAGTCGCGTTTATATCTTCCATACCTAAAAATCCATCTGGCAAAATTCTTCGCAAGGATCTCATCAAGCTTGCAACTTCTAAACTATGA 1650 0.5485 MMEEQQIDQRSGFCPSNSVFYSKRKPLPLPPNNALDVTTFISSRAHRGTTAFIDAATGHHLSYTQLWRSVEGVAASLWDMGIRKGNVVLLLSPNSIDFPVVCLAVMSLGAVITTTNPLNTTREIAKQIADSKPLLAFTTSLLLPKLTQAAPSLPIVLMDATTHPPIPNAKIVATLHDMAQKEPSAQRVRERVELDDTATLLYSSGTTGPSKGVLSSHRNLIAMVQIVLGRFHVGDTETYICTVPMFHIYGLVAFATGLLASGSTIVVLSKFEMHDMLSAIQRFSATYLPLVPPILVAMLNNADAIKKKYDIKSLHWVLSGGAPLSKEVIEGFVDKYPNVTILQGYGLTESTGVGASTDSLEESRRYGTAGLLSPGTQAMIVDPDSGQSLPVNRTGELWLRGPTIMKGYFSNEEATTSTLDSKGWLRTGDVCYIDSDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHDAILDAAVIPYPDKEAGQFPMAYVVRKDGSSLSESQVMNFVAEQVAPYKRIRKVAFISSIPKNPSGKILRKDLIKLATSKL* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1991 549 Gene3D - 447 548 IPR045851 -
Vra6g1991 549 Pfam AMP-binding enzyme C-terminal domain 460 535 IPR025110 -
Vra6g1991 549 PANTHER BNAA06G14440D PROTEIN 8 548 - -
Vra6g1991 549 Gene3D - 18 446 IPR042099 -
Vra6g1991 549 Pfam AMP-binding enzyme 44 451 IPR000873 -
Vra6g1991 549 ProSitePatterns Putative AMP-binding domain signature. 200 211 IPR020845 -
Vra6g1991 549 SUPERFAMILY Acetyl-CoA synthetase-like 43 546 - -
Vra6g1991 549 CDD 4CL 29 541 - -
Vra6g1991 549 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 8 548 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1991 Vra-Chr6 36609158 36611825 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1991 7 549 Monolignol Biosynthesis Gene Families AT1G20500 64.781 0.0 724
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1991 K10526 - gmx:100811344 937.947
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1991 6 36609158 36611825 Vra6g1991 6 36609158 36611825 ECH