Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1990 ATGCATATGAATATGCATAGATTCAGAGCAAGGGTTTTTCTGCGTTCAATTTCACTTTGTAAATCTAAGTGGCATCAACACCATGGTGCTCAAATTCACTTCTCTCAAAATCGCACCTCCACAGGTCCTGGATTTGTTGAATTTGAAACAGAACCATCTATGCAGATGCAAGTTCTTAAGGCACTCTGCTCGGGTGAGAGAAAGAAGGCTTCAGACTTACTTTTGGATTTTGGTTCCAGAACCCACTCATTAACTGCCGACGATTTTCTTCATATTTTTAAGTACTGTGCACGCTCTCCTGATCCATTGTTTGTAATGGAGATTCGGAGATTCATGGAATTAAAAGGTGTTAGCATGAACATTATTTGCTCATCTCTTATGATAGAGGCCCTTTGTAAAGGAGGTTGCTTGGAGGAGGCCTTTCATGTCATGGATTCTCTTGGAGGAAGTCAATGTCTCTATCCAGTTCTCCCACTTTACAATAGTCTCTTAGGATCCTGCACGAAAATGCAGAGTCTAATTCAAGCAAACAAATGTTTGGACATAATGGAAAAGAAGATAGTAGGGAGGAGTGAAGTTACATATACCGAGCTTCTCAAGCTTGCAGTTTTGGCGAAAAACTTGCCTGCAGCCCATCTTCTTTGGCAGGAGTATGTGAAAAACTATAGCATGAGTATCATTCCTCTGCGAAAATTCATTTGGTCATTTACAAGGTTAAGAGATTTAGAATCTGCTCATAAAACACTACAACAAATGGTGTCATTAGTTGGCAGGGGAAACTTTTCAATCGGTAAAACAGTTTATGGGAAGTTGTATTCTACTAGAATGGACATCCCTGTGCCTTCAAATAAGGGGCTAGGCTTAACTCTATCAGACTTGAAGGAGTTAAAAAAATTGGACTCTTGTACGAGTGCTGAATTATATGCACTCAATGGAGAAGAACGCTCACTACATGTGAAGGTGTTGAGGTGGTCCTTTAATGACATAATACATGGGTGTGCAAACCAAAAGAATTATATTCTTGCAAAGAAGCTTATGTTACAGATGGAAAATCTTGGTTTGCAGCCATCCTGCCATACATATAATGGTATTATTAAAGCAGCTGTTTCTCATGGAAATGTTGGAGATGCCATAGGAGTGTTGAAAAAAATGCAGCAGAAGAAATTGAAGCCGAATGATTCAACTTTAGCAACACTTTCAATCACATGCAGTAAAGCACTACAGTTAGATTTAGCTGAGGCTTTTCTGAATCAGATTTCTGAATGTCTATATCCACATCCTTATAATGCTTTGCTAGCATCATGCGATGAATTGAATCAACCTGAACGTGCAGTGCAAGTGTTTGCCAAGATGAAGCAGAAAAAAGTTTTGCCTAATATCAGGACTTGTGAGCTTCTATTTTCGTTATTTGGTGTTGTAAATGCCCCTTATGAAGACAGTGATATACTGTCACAGGTGGATGCTGCTAAAAGAATAAATGCTATACAAAAAGATATGGCCACAAATGGCATTAAGCACAGTCATCTTTCAATAAAAAACATATTGAAAGCCCTTGGAGAAGAAGGGATGATAAGAGAGCTGATCCAGTATTTACACCTGGCAGAGAATCTTTTCATTTATCAAAACCCTTCATCGGGAACTCATATGTACAACACAGTGTTACATTATCTTGTTGAAGCCAAAGAAAGTGACATGGCAATTGCAGTTTTCAAGAAGATGAAGTTATGTGGCTGCAACCCTGACTCTGAAACATACAATATAATGATTGACTGTTGTACCATTATACAAAGTTACAGATCTGCTTGTTTGCTGATTTCAATGATGATACGGAAAGGGTTTTGTCCAGTGATTTGTACATATACCGCTATCATTAAGATTTTATTGGAAGATGACAACTTTGATGAAGCCCTGAATCTTTTGAAACAAGTCAAATTAGATGGCATCCAACCTGATGTACTGCTGTTCAATACAGTTCTTAAACAAGCTTGTTACAAGGAAAGAATCGATGTAATTGAGTTCATTGTGGAGCTTATGCACCGAGAGAAAGTTCCCCCCGATCCAAGGACATGCGGCTATGTGTTCTCTGCATATGTAAATTCTGGTTTTCACAGCACAGCAATTGAAGCCTTGCAGGTTTTAAGTTTGCGTATGATATCTGAAGATGGCAACATACTTGGAGAGGAGAAAAAATTTGTAAATGAATTCATCCTGTCTGAAGATTTGTCTGCTGAATCACAGATACTCAAGTTATTTGAAGATTCTGAAGATGAACTTGCAGTTGGGTTGTTGAATTTAAGATGGTGTGCCATAGCTGGATTCCCAATATGCGAGTCAGCTGATCAAAGTCTGTGGGCGAGAAGACTGGAAGGAAAGCGATTCTGA 2382 0.3879 MHMNMHRFRARVFLRSISLCKSKWHQHHGAQIHFSQNRTSTGPGFVEFETEPSMQMQVLKALCSGERKKASDLLLDFGSRTHSLTADDFLHIFKYCARSPDPLFVMEIRRFMELKGVSMNIICSSLMIEALCKGGCLEEAFHVMDSLGGSQCLYPVLPLYNSLLGSCTKMQSLIQANKCLDIMEKKIVGRSEVTYTELLKLAVLAKNLPAAHLLWQEYVKNYSMSIIPLRKFIWSFTRLRDLESAHKTLQQMVSLVGRGNFSIGKTVYGKLYSTRMDIPVPSNKGLGLTLSDLKELKKLDSCTSAELYALNGEERSLHVKVLRWSFNDIIHGCANQKNYILAKKLMLQMENLGLQPSCHTYNGIIKAAVSHGNVGDAIGVLKKMQQKKLKPNDSTLATLSITCSKALQLDLAEAFLNQISECLYPHPYNALLASCDELNQPERAVQVFAKMKQKKVLPNIRTCELLFSLFGVVNAPYEDSDILSQVDAAKRINAIQKDMATNGIKHSHLSIKNILKALGEEGMIRELIQYLHLAENLFIYQNPSSGTHMYNTVLHYLVEAKESDMAIAVFKKMKLCGCNPDSETYNIMIDCCTIIQSYRSACLLISMMIRKGFCPVICTYTAIIKILLEDDNFDEALNLLKQVKLDGIQPDVLLFNTVLKQACYKERIDVIEFIVELMHREKVPPDPRTCGYVFSAYVNSGFHSTAIEALQVLSLRMISEDGNILGEEKKFVNEFILSEDLSAESQILKLFEDSEDELAVGLLNLRWCAIAGFPICESADQSLWARRLEGKRF* 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1990 793 Gene3D Tetratricopeptide repeat domain 645 714 IPR011990 GO:0005515
Vra6g1990 793 Pfam PPR repeat 125 146 IPR002885 -
Vra6g1990 793 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 616 650 IPR002885 -
Vra6g1990 793 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 357 391 IPR002885 -
Vra6g1990 793 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 790 - -
Vra6g1990 793 Pfam Pentatricopeptide repeat domain 607 660 IPR002885 -
Vra6g1990 793 Pfam Pentatricopeptide repeat domain 345 392 IPR002885 -
Vra6g1990 793 Pfam Pentatricopeptide repeat domain 428 471 IPR002885 -
Vra6g1990 793 Gene3D Tetratricopeptide repeat domain 545 644 IPR011990 GO:0005515
Vra6g1990 793 Gene3D Tetratricopeptide repeat domain 427 544 IPR011990 GO:0005515
Vra6g1990 793 Gene3D Tetratricopeptide repeat domain 58 274 IPR011990 GO:0005515
Vra6g1990 793 Gene3D Tetratricopeptide repeat domain 299 426 IPR011990 GO:0005515
Vra6g1990 793 TIGRFAM PPR: pentatricopeptide repeat domain 618 652 IPR002885 -
Vra6g1990 793 TIGRFAM PPR: pentatricopeptide repeat domain 359 392 IPR002885 -
Vra6g1990 793 TIGRFAM PPR: pentatricopeptide repeat domain 584 615 IPR002885 -
Vra6g1990 793 TIGRFAM PPR: pentatricopeptide repeat domain 549 582 IPR002885 -
Vra6g1990 793 Pfam PPR repeat family 547 592 IPR002885 -
Vra6g1990 793 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 581 615 IPR002885 -
Vra6g1990 793 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 546 580 IPR002885 -
Vra6g1990 793 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 424 458 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1990 325 755 Glycosyltransferase AT1G05670 20.339 2.21e-17 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1990 - - vun:114194590 1455.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1990 6 36595903 36606402 Vra6g1990 6 36595903 36606402 ECH